View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19106_high_25 (Length: 207)

Name: NF19106_high_25
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19106_high_25
NF19106_high_25
[»] chr2 (7 HSPs)
chr2 (16-186)||(10339367-10339537)
chr2 (47-175)||(10345861-10345981)
chr2 (69-136)||(10378335-10378402)
chr2 (55-136)||(10370097-10370176)
chr2 (70-130)||(10363695-10363755)
chr2 (70-130)||(10342332-10342394)
chr2 (55-111)||(10350385-10350441)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 10339537 - 10339367
Alignment:
Q  16 aatatcatttaagaattattattcnnnnnnngatgaatgtggaggtagaaagaatactctcctggatcttatgtcacaccaaaatttggaagctattctt 115  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10339537 aatatcatttaagaattattattcaaaaaaagatgaatgtggaggtagaaagaatactctcctggatcttatgtcacaccaaaatttggaagctattctt 10339438  T
Q  116 caatgaacattaggattgcaattatgcaaatgaaactagtgatgattctatatttagtcctgtgtcagcat 186  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10339437 caatgaacattaggattgcaattatgcaaatgaaactaatgatgattctatatttagtcctgtgtcagcat 10339367  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 10345981 - 10345861
Alignment:
Q  47 gatgaatgtggaggtagaaagaatactctcctggatcttatgtcacaccaaaatttggaagctattcttcaatgaacattaggattgcaattatgcaaat 146  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||| |||||| ||||||||| |||||| |||||||| |        ||||||||    
T  10345981 gatgaatgtggaggtagaaaggatactctcctcgatcttatgtcacacccaaatttagaagctattgttcaattaacattagaa--------atgcaaat 10345890  T
Q  147 gaaactagtgatgattctatatttagtcc 175  Q
    ||| || ||||||||||||||||||||||    
T  10345889 gaatcttgtgatgattctatatttagtcc 10345861  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 10378402 - 10378335
Alignment:
Q  69 atactctcctggatcttatgtcacaccaaaatttggaagctattcttcaatgaacattaggattgcaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  10378402 atactctcctggatcttatgtcacaccaaaatttggaagctattcttcgatgaacattaggaatgcaa 10378335  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 10370176 - 10370097
Alignment:
Q  55 tggaggtagaaagaatactctcctggatcttatgtcacaccaaaatttggaagctattcttcaatgaacattaggattgcaa 136  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||  |||||||||||||||| |||||    
T  10370176 tggaggtagaaagaatactcttctggatcttatgt--caccaaaatttggaagctatttgtcaatgaacattaggaatgcaa 10370097  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 10363755 - 10363695
Alignment:
Q  70 tactctcctggatcttatgtcacaccaaaatttggaagctattcttcaatgaacattagga 130  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10363755 tactctccttgatcttatgtcacactaaaatttggaagctattcttcaatgaacattagga 10363695  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 10342394 - 10342332
Alignment:
Q  70 tactctcctggatcttatgtcacaccaaaatttggaagc--tattcttcaatgaacattagga 130  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  10342394 tactctccttgatcttatgtcacaccaaaatttggaagctatattcttcaatgaacattagga 10342332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 10350441 - 10350385
Alignment:
Q  55 tggaggtagaaagaatactctcctggatcttatgtcacaccaaaatttggaagctat 111  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||||    
T  10350441 tggaggtagaaagaatactctcctgaatcttacttcacacccaaatttggaagctat 10350385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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