View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_high_4 (Length: 477)
Name: NF19106_high_4
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 38662553 - 38662092
Alignment:
| Q |
1 |
tccttgagaaggaagaagctcaatatctgagagagtcaagttggtgcaagggattgagtcactgcatgcaaaatgcataggagggtgtcttatatcataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38662553 |
tccttgagaaggaagaagctcaatatctgagagagtcaagttggtgcaagggattgagtcactgcatgcaaaatgcataggagggtgtcttatatcataa |
38662454 |
T |
|
| Q |
101 |
gttccctttatgcttgtgtaaactatatctgatacaaatactgcagaggttttgttgctgcaatctttactgaggcagtaaaattggtcaattataatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38662453 |
gttccctttatgcttgtgtaaactatatctgatacaaatactgcagaggttttgttgctgcaatctttactgaggcagtaaaattggtcaattataatag |
38662354 |
T |
|
| Q |
201 |
gattttttactgtatccatgtgaatattactgaatgttactcctgatactgatcctgatccaccttgccatgtcttaattcttaccccattatctgatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38662353 |
gattttttactgtatccatgtgaatattactgaatgttactcctgatactgatcctgatccaccttgccatgtcttgattcttaccccattatctgatac |
38662254 |
T |
|
| Q |
301 |
ccttataactgagtccctcactgttatgtttgatacacatgctcttgagttgtggtttcccaaactaccaatgctgaataaaatacaataaaaataacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38662253 |
ccttataactgagtccctcactgttatgtttgatacacatgctcttgagttgtggtttcccaaactaccaatgctgaataaaatacaataaaaataacat |
38662154 |
T |
|
| Q |
401 |
tagnnnnnnngttttgtttgaaataacattaaatcatgtaccattacaacaatatataaagt |
462 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38662153 |
tagattttttgttttgtttgaaataacattaaatcatgtaccattacaacaatatataaagt |
38662092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 45101241 - 45101618
Alignment:
| Q |
1 |
tccttgagaaggaagaagctcaatatctgagagagtcaagttggtgcaagggattgagtcactgcatgcaaaatgcataggagggtgtcttatatcataa |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || | ||| |||||||||| |||||||| || |||||||||||||||||| | ||||||||||| |
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| T |
45101241 |
tccttgagaaggaagaagctcaatttctgagagtgttatgttagtgcaagggacagagtcactacaagcaaaatgcataggagggctttttatatcataa |
45101340 |
T |
|
| Q |
101 |
gttccctttatgcttgtgtaaactatatctgatacaaatactgcagaggttttgttgctgcaatctttactgaggcagtaaaattggtcaattataatag |
200 |
Q |
| |
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||||| || ||| ||||||||| || | ||||||| ||||||| |||||||||||| | |||||||| | ||||| || ||||||||||||| || | |
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| T |
45101341 |
gttcctttgatgtttgtgtaaagaatgtttgatacagatactgctgaggttttgttggtacaatctttggttaggcaatagtattggtcaattatgattg |
45101440 |
T |
|
| Q |
201 |
gattttttactgtatccatgtgaatattactgaatgttactcctgatactgatcctgatccaccttgccatgtcttaattcttaccccattatctgatac |
300 |
Q |
| |
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||||| |||| || ||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||| ||||| | ||||||||||| | |
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| T |
45101441 |
gatttcttacactaatcatgtgaatattattgaatgttactcctgaaactgaccctgatcctccttgccatgtcttgattctgattccattatctgacat |
45101540 |
T |
|
| Q |
301 |
ccttataactgagtccctcactgttatgtttgatacacatgctcttgagttgtggtttcccaaactaccaatgctgaa |
378 |
Q |
| |
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|||| | ||||| |||||||| |||||||||||||||||| | | |||||| ||||| | |||||| |||||||| |
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| T |
45101541 |
ttttatgatcgagtctctcactgtaatgtttgatacacatgctttcgtgttgtgatttcctagactacctatgctgaa |
45101618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 38834746 - 38834662
Alignment:
| Q |
259 |
tccaccttgccatgtcttaattcttaccccattatctgatacccttataactgagtccctcactgttatgtttgatacacatgct |
343 |
Q |
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|||||||||||||||||| ||||||| ||||| |||||| | ||||| |||| ||| | ||||||| |||||| ||||||||| |
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| T |
38834746 |
tccaccttgccatgtctttattcttagtccattgtctgattctcttatcactgtgtcacggactgttaagtttgagacacatgct |
38834662 |
T |
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