View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19106_high_8 (Length: 405)
Name: NF19106_high_8
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 4075160 - 4075562
Alignment:
| Q |
1 |
agataacaaaccaaaccaaacataaatgtaacgtattgtacttaaagttttcaatatcaaatgtttgtcatctatggaaaatataggcataaagaagctc |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4075160 |
agataacaaaacaaaccaaagataaatgtaacatattttacttcaagttttcaatatcaaatgtttgtcatctatggaaaatataggcataaagaagctc |
4075259 |
T |
|
| Q |
101 |
attccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcatatgattttggatttgatatttgctcttctgttaaaggctcccattgcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4075260 |
attccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttagaggctcccattgcttc |
4075359 |
T |
|
| Q |
201 |
ctatagatagatggatggccttcttttctgtactctgatagctgtgtgatgttaagcaattgaacattcaaacctctagttttcaaatcttctagaacat |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
4075360 |
ctatagatagatggatgaccttcttttctgtactctgagagttgtgttatgttaagcaattgaacattcaaacctcttcttttcaaatcttgtagaacat |
4075459 |
T |
|
| Q |
301 |
tttcaaccacttgcatcattttaggaacagaaccatttccactatatccatcttctgtaatttgatctctttctttgtaacaattttcaccctttgctac |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4075460 |
tttccaccacttgcatcattttaggaacagaaccatttccactatatccctcttctttaatttgatctctttctttgtaacaattttcaccctttgctcc |
4075559 |
T |
|
| Q |
401 |
tcc |
403 |
Q |
| |
|
||| |
|
|
| T |
4075560 |
tcc |
4075562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 5232953 - 5232904
Alignment:
| Q |
101 |
attccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcat |
150 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||| ||||| |||| |
|
|
| T |
5232953 |
attccaagtatcaggaacaccaggcaaacaccaatgtatacaatcagcat |
5232904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 77 - 325
Target Start/End: Complemental strand, 25824924 - 25824676
Alignment:
| Q |
77 |
gaaaatataggcataaagaagctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatctgcatatgattttggatttgatatttgctct |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || || || || ||||||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
25824924 |
gaaaatataggcataaagaagctcattccatacatcaggaactcctggtaggcaccaatgtatgcaatctgcataaccatttggatttgatatctgttct |
25824825 |
T |
|
| Q |
177 |
tctgttaaaggctcccattgcttcctatagatagatggatggccttcttttctgtactctgatagctgtgtgatgttaagcaattgaacattcaaacctc |
276 |
Q |
| |
|
| |||| ||| ||||| || |||||||||||||| || || |||||||||||||| ||||| || |||||||||||||||| ||||||||| |||||| |
|
|
| T |
25824824 |
tgagttagaggttcccactgtttcctatagatagaagggtgaccttcttttctgtattctgagagttgtgtgatgttaagcatttgaacatttaaacctt |
25824725 |
T |
|
| Q |
277 |
tagttttcaaatcttctagaacattttcaaccacttgcatcattttagg |
325 |
Q |
| |
|
| ||||||||||| || || || || || |||||||||||||||||||| |
|
|
| T |
25824724 |
ttgttttcaaatcatcaagcaccttctccaccacttgcatcattttagg |
25824676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 37804151 - 37804102
Alignment:
| Q |
87 |
gcataaagaagctcattccaagtatcaggcacaccagggagacaccaatg |
136 |
Q |
| |
|
|||||||||| ||||||||| | ||| || |||||||||||||||||||| |
|
|
| T |
37804151 |
gcataaagaatctcattccacgaatcgggaacaccagggagacaccaatg |
37804102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 19411833 - 19411880
Alignment:
| Q |
98 |
ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
145 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
19411833 |
ctcattccaaatatcaggcacaccagggaggcaccaatgactgcaatc |
19411880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 50750156 - 50750203
Alignment:
| Q |
98 |
ctcattccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
145 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
50750156 |
ctcattccaaatatcaggcacaccagggaggcaccaatggctgcaatc |
50750203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 7821917 - 7821871
Alignment:
| Q |
87 |
gcataaagaagctcattccaagtatcaggcacaccagggagacacca |
133 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
7821917 |
gcataaagtagctcattccatgtatcaggtacaccaggaagacacca |
7821871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 7812386 - 7812337
Alignment:
| Q |
87 |
gcataaagaagctcattccaagtatcaggcacaccagggagacaccaatg |
136 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||| || ||||||||||| |
|
|
| T |
7812386 |
gcataaagtagctcattccatgtatcaggtacaccgggaagacaccaatg |
7812337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 15113399 - 15113355
Alignment:
| Q |
101 |
attccaagtatcaggcacaccagggagacaccaatgtatgcaatc |
145 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
15113399 |
attccaagtatcaggaacaccaggcagacaccaatggctgcaatc |
15113355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 25962764 - 25962716
Alignment:
| Q |
99 |
tcattccaagtatcaggcacaccagggagacaccaatgtatgcaatctg |
147 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||| ||||||||| |
|
|
| T |
25962764 |
tcattccaagtatcaggtaaaccaggaagacaccaatgactgcaatctg |
25962716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University