View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_low_11 (Length: 356)
Name: NF19106_low_11
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 340
Target Start/End: Original strand, 13084952 - 13085276
Alignment:
| Q |
17 |
gaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaagtaatgatgtgaatgttgtatggcaaagaaccacttccattaatgaaa |
116 |
Q |
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| T |
13084952 |
gaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaagcaatgatgtgaatggtgtatggcaaagaaccacttccattaatgaaa |
13085051 |
T |
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| Q |
117 |
ttggattctatccagcagatgctcaacctcaacaagtcttccnnnnnnnnnnn-gtaaattatttcggactttccaaatagatcacacagttgaattcta |
215 |
Q |
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| T |
13085052 |
ttggattctatcgagtagatgctcaacctcaacaagtcttccaaaaaaaaaaaagtaaattatttcggactttccaaatagatcacacagttgcatgcta |
13085151 |
T |
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| Q |
216 |
gaccaaaaggaaacctagcctataccgcctctttgcctttaagaatacaaacacctgaaacaacaccaccaaattacctgacaagacccactcccaacct |
315 |
Q |
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| T |
13085152 |
gaccaaaaggaaacctagcctataccgcctctttgcctttaagaatacaaacacctgaaacaacaccaccaaattacctgacaagacccactcccaacct |
13085251 |
T |
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| Q |
316 |
aaccgcatgcaaatatcgtaccaaa |
340 |
Q |
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| T |
13085252 |
aaccgcctgcaaatatcgtaccaaa |
13085276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 13013846 - 13013899
Alignment:
| Q |
287 |
aattacctgacaagacccactcccaacctaaccgcatgcaaatatcgtaccaaa |
340 |
Q |
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| T |
13013846 |
aattacctgacaagacccactcccaacctaaccgcctgcaaatatcgtaccaaa |
13013899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 13013796 - 13013847
Alignment:
| Q |
17 |
gaacctaattggtttcagcaaggacgagctccaccttccacttataaagtaa |
68 |
Q |
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| T |
13013796 |
gaaccttattggtttcaacaaggacgagctccaccttccacttataaagtaa |
13013847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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