View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_low_12 (Length: 347)
Name: NF19106_low_12
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 2970157 - 2969835
Alignment:
| Q |
9 |
attatactacagaatagcatgataccaccgctatagttgctatttaacaacactacgtgagtgttgttaaatagcagctatagcagcggaattgaactgc |
108 |
Q |
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| T |
2970157 |
attatactacagaatagcatgataccaccgctatagttgctatttaacaacactacgtgagtgttgttaaatagcagctatagcagcggaattgaactgc |
2970058 |
T |
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| Q |
109 |
aatgtgccactaacagctttgatcaacacacaaccaaactatccaacatgcacattaccgaattaagggcgaattcacattccgaagctggaagcaaaaa |
208 |
Q |
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| T |
2970057 |
aatgtgccactaacaactttgatcaacacacaaccaaactatccaacatgcaaattaccgaattaagggcgaattcacattccgaagctggaagcaaaaa |
2969958 |
T |
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| Q |
209 |
cctcgaaatactctcagatgaaagtccatctcgcgcaccggcaacaacaccaaccgccggctttggtttcttagcgaaaaaactcatctgctccaacaac |
308 |
Q |
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| T |
2969957 |
cctcgaaatactctcagatgaaagtccatctcgcgcaccggcaacaacaccaaccgccggctttggtttcttagcgaaaaaactcatctgctccaacaac |
2969858 |
T |
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| Q |
309 |
tgctccttagacaaatccttatt |
331 |
Q |
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| T |
2969857 |
tgctccttagacaaatccttatt |
2969835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 2970074 - 2970128
Alignment:
| Q |
38 |
gctatagttgctatttaacaacact-acgtgagtgttgttaaatagcagctatagc |
92 |
Q |
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| T |
2970074 |
gctatagctgctatttaacaacactcacgt-agtgttgttaaatagcaactatagc |
2970128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 7574016 - 7573988
Alignment:
| Q |
68 |
agtgttgttaaatagcagctatagcagcg |
96 |
Q |
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| T |
7574016 |
agtgttgttaaatagcagctatagcagcg |
7573988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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