View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_low_14 (Length: 313)
Name: NF19106_low_14
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 787171 - 786962
Alignment:
| Q |
1 |
cagctttttcttccttttctcagaataggcaaaactcattgttcatttttcaagaaaatgactaatccctcattttgtatagaatgattatataagcaaa |
100 |
Q |
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| T |
787171 |
cagctttttcttccttttctcagaataggcaaaactcattgttcatttttcaagaaaatgactaatccctcattttgtatagaatgattatataagcaaa |
787072 |
T |
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| Q |
101 |
atctaacttctctatactatccctctcctttagttttatataaattctaatgaccaaatatattagccattgagggtgatttagataacaaaattaattt |
200 |
Q |
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| T |
787071 |
atctaacttctctatactatccctctcctttagttttatataaattctagtgaccaaatatattagccattgagggtgatttagataacaaaattaattt |
786972 |
T |
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| Q |
201 |
tttattgagt |
210 |
Q |
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|||||||||| |
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| T |
786971 |
tttattgagt |
786962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 786922 - 786827
Alignment:
| Q |
209 |
gtaatttaatcaatcttggcttatatttcatttcacatttagaatctgacaagggttttgttctaacaatttggacgttgatgactctatattctt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
786922 |
gtaatttaatcaatcttggcttatatttcatttcacatttagaatctgacaagggttttgttctaacaattttgacgttgatgactctattttctt |
786827 |
T |
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