View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_low_18 (Length: 301)
Name: NF19106_low_18
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 39 - 283
Target Start/End: Complemental strand, 22690739 - 22690499
Alignment:
| Q |
39 |
cttcacaaattgtttcacataaatgtgtatgttatcaccatattaactgttgatattacaatcagtagctatcctcatactttagtttctagaggttaaa |
138 |
Q |
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| T |
22690739 |
cttcacaaattgtttcacatgcatgtatattttatcac----ttaactgtttatattacaatcagcagctatcctcatactttagtttctagaggttaaa |
22690644 |
T |
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| Q |
139 |
catttaactctagagtaactaaatccctgattttgatacacaatcactatgtgcagaatatagacatgaacaaggatgaaatattaccgacgtgaacatg |
238 |
Q |
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| T |
22690643 |
catttaactctagagtaactaaatccctgcttttgatacacaatcactatgtgcagaatatagacatgaacaagtatgaaacataaccgacatgaacatg |
22690544 |
T |
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| Q |
239 |
gggtccattggagtttttatgttcatcaccataaattgaatctag |
283 |
Q |
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| T |
22690543 |
gggcccattggagtttttatgttcacaaccataaattgaatctag |
22690499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 22749663 - 22749587
Alignment:
| Q |
134 |
ttaaacatttaactctagagtaactaaatccctgattttgatacacaatcactatgtgcagaatatagacatgaaca |
210 |
Q |
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| T |
22749663 |
ttaaacatttaactctagagtaactaaatccctgattttgatacacaatcactatgtgcagaatatagacatgaaca |
22749587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 22726761 - 22726847
Alignment:
| Q |
61 |
atgtgtatgttatcaccatattaactgttgatattacaatcagtagctatcctcatactttagtttctagaggttaaacatttaact |
147 |
Q |
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| T |
22726761 |
atgtgtattttatcaccatattaactgttgatattacaattagtagctatcctcatactttagtttctagaggttaaacacttaact |
22726847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 22749592 - 22749539
Alignment:
| Q |
231 |
tgaacatggggtccattggagttttt-atgttcatcaccataaattgaatctag |
283 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
22749592 |
tgaacatggggtccattggagttttttatgttcataaccataaattgaatctag |
22749539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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