View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_low_19 (Length: 296)
Name: NF19106_low_19
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 30757428 - 30757156
Alignment:
| Q |
19 |
ccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgc |
118 |
Q |
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| T |
30757428 |
ccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaataatacttctcttctttcactcccttctcttgctgaagataatgtgc |
30757329 |
T |
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| Q |
119 |
ttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757328 |
ttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatca |
30757229 |
T |
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| Q |
219 |
cacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggcctatgctact |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30757228 |
cacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggccaatgctact |
30757156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 30764880 - 30764608
Alignment:
| Q |
19 |
ccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgc |
118 |
Q |
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| T |
30764880 |
ccattgcctaccttgaataagaatttctctttggttttacaagaagaaagtaataatacttctcttctttcactcccttctcttgctgaagataatgtgc |
30764781 |
T |
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| Q |
119 |
ttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatca |
218 |
Q |
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| T |
30764780 |
ttgttaatgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatca |
30764681 |
T |
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| Q |
219 |
cacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggcctatgctact |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30764680 |
cacaattgactttttctatcaaaagcatggctatcctaatgtgaacaagaagatttcacaggccaatgctact |
30764608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 271
Target Start/End: Original strand, 25227198 - 25227444
Alignment:
| Q |
25 |
cctaccttgaataagaatttctctttggttttacaagaagaaagtaaaaatacttctcttctttcactcccttctcttgctgaagataatgtgcttgtta |
124 |
Q |
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||||||||||| ||| ||||| ||||||||| ||||||||||||| ||| ||||| | | |||| | ||||| |||| || |||||||| ||||||| |
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| T |
25227198 |
cctaccttgaacaaggttttctttttggttttgcaagaagaaagtagcaatgcttctttaccttcaattccttcccttgtcgaggataatgtacttgtta |
25227297 |
T |
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| Q |
125 |
atgcatatgatgcaaagaaaccttaagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaat |
224 |
Q |
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||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||| || |
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| T |
25227298 |
atgcatatgatgcgaagaaaccacaagggcatggtaaaggttcattcactaaaccttcatcaaggttttgtaccttttgcaataggcacaatcacaccat |
25227397 |
T |
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| Q |
225 |
tgactttttctatcaaaagcatggctatcctaatgtgaacaagaaga |
271 |
Q |
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||| |||| ||| |||| ||| | |||| ||||||||| ||||||| |
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| T |
25227398 |
tgatttttgttataaaaaacattgatatcttaatgtgaataagaaga |
25227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 267
Target Start/End: Complemental strand, 20700552 - 20700433
Alignment:
| Q |
148 |
taagggcgtggtaaatgttcattcactaaaccttcatcaaggttttgcattttttgaaatagacacaatcacacaattgactttttctatcaaaagcatg |
247 |
Q |
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|||||||||| |||| | |||| || ||||||||| ||||||| ||||| ||||| || | | ||||||||| ||| ||||| ||||||||||||| |
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| T |
20700552 |
taagggcgtgataaaggatcatacattaaaccttcttcaaggtattgcaccttttgcaacaaatacaatcacaatgttgtttttttttatcaaaagcatg |
20700453 |
T |
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| Q |
248 |
gctatcctaatgtgaacaag |
267 |
Q |
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|| |||||||||||||||| |
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| T |
20700452 |
actttcctaatgtgaacaag |
20700433 |
T |
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