View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19106_low_5 (Length: 461)

Name: NF19106_low_5
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19106_low_5
NF19106_low_5
[»] chr3 (32 HSPs)
chr3 (1-446)||(8568132-8568577)
chr3 (222-454)||(6721468-6721700)
chr3 (54-430)||(8471977-8472356)
chr3 (322-446)||(7750427-7750551)
chr3 (344-446)||(6590855-6590957)
chr3 (333-446)||(5250569-5250682)
chr3 (333-446)||(6448298-6448411)
chr3 (348-446)||(6519693-6519791)
chr3 (228-446)||(8455054-8455272)
chr3 (333-446)||(4388453-4388566)
chr3 (241-442)||(6736394-6736595)
chr3 (58-289)||(6838139-6838373)
chr3 (228-442)||(6553849-6554063)
chr3 (322-444)||(13270093-13270215)
chr3 (75-258)||(5268644-5268830)
chr3 (203-443)||(5299134-5299374)
chr3 (242-446)||(6947669-6947873)
chr3 (228-446)||(8590129-8590347)
chr3 (322-443)||(6266122-6266243)
chr3 (378-446)||(6142711-6142779)
chr3 (58-262)||(5250753-5250960)
chr3 (322-433)||(6259595-6259706)
chr3 (400-446)||(6900516-6900562)
chr3 (408-446)||(6917526-6917564)
chr3 (345-446)||(6479510-6479611)
chr3 (322-443)||(6882935-6883056)
chr3 (333-388)||(5268514-5268569)
chr3 (400-446)||(5281084-5281130)
chr3 (41-102)||(6169648-6169709)
chr3 (41-102)||(6246047-6246108)
chr3 (41-102)||(6259911-6259972)
chr3 (336-385)||(6838420-6838469)
[»] chr7 (1 HSPs)
chr7 (196-446)||(6572677-6572927)
[»] scaffold0425 (1 HSPs)
scaffold0425 (228-442)||(6888-7102)
[»] chr1 (1 HSPs)
chr1 (322-446)||(35139893-35140017)


Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 8568132 - 8568577
Alignment:
Q  1 ttgagcaactattggatattattgctaccaatgcgcaaagaaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8568132 ttgagcaactattggatattattgctaccaatgcacaaagaaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaa 8568231  T
Q  101 agatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaaccaaagagcctgtactagtgaaggtgcggttagattgaaatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8568232 agatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaaccaaagagcctgtactagtgaaggtgcggttagattgaaatcc 8568331  T
Q  201 tcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8568332 tcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatg 8568431  T
Q  301 atggtggcaaccatgtgagcgtaataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaa 400  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  8568432 atggtggcaaccatgtgagcgtaataagtattgtgggtctaggtgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaa 8568531  T
Q  401 gcaatttgaacttaaagcttgggtccatgtttcagaatcttttgat 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8568532 gcaatttgaacttaaagcttgggtccatgtttcagaatcttttgat 8568577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 454
Target Start/End: Original strand, 6721468 - 6721700
Alignment:
Q  222 tctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcg 321  Q
    |||||||||||||||||   |||||||||| ||||  |||| ||| |  ||||||||||||  |||||||  || | |||  ||| |||||| |||  |     
T  6721468 tctttggtggatgaatcggtcatatatggtcgagagcatgagaaagaagaaataatcaatttcttgctttctgatagtgacagtgacaaccaggtgccca 6721567  T
Q  322 taataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttg 421  Q
    |||| ||||| |||||||||  |||||| |||||||| || ||||| |  ||||| ||||||||||||| | ||| | |||||| |||||||||||||||    
T  6721568 taatcagtatagtgggtctgattgggataggtaagacaacccttgcccagcttgtttacaatgaccacaggatagtggagcaatatgaacttaaagcttg 6721667  T
Q  422 ggtccatgtttcagaatcttttgatattcttcg 454  Q
    |||| || ||||||||||||||||| |||||||    
T  6721668 ggtctatctttcagaatcttttgatgttcttcg 6721700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 430
Target Start/End: Complemental strand, 8472356 - 8471977
Alignment:
Q  54 caacacttcctttcaggttttactaatcgatttgaatctaggatcaaagatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggat 153  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||| ||||| | ||||    |||||| | |||||  |||||||||||||| ||||||    
T  8472356 caacacttcctttcagctttcattaatcgatttgaatctaggatcagagattcgctagatgaactaaaacttcttgccgatcaaaaggatgtgttgggat 8472257  T
Q  154 tgaaccaaagagcctgtactagt---gaaggtgcggttagattgaaatcctcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatgg 250  Q
    | |  || |||   |   |||||   |||||||| |||||  || ||||||| ||||||| ||||||||| ||||| ||||||||||||| ||||  |||    
T  8472256 taacacagagaagtttccctagttatgaaggtgcagttagcctgcaatcctcgaaaagatcgccaactgcatctttagtggatgaatcttccatacgtgg 8472157  T
Q  251 tagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataagtattgtgggtctgggtgggatg 350  Q
    |||||| | ||| ||| |  || ||||||| ||||||||||   |||| ||   ||||||||| ||       || || || |||||| ||  |||||||    
T  8472156 tagagaaggtgacaaagaagaattaatcaagtatttgctttcttacaacgacaatggcaaccaagtatcaactatcagcatagtgggtttgcctgggatg 8472057  T
Q  351 ggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgt 430  Q
    || |||||||| |||||||  ||||||||||||||||| | | | || ||||| ||||||||||||| ||||||||||||    
T  8472056 gggaagaccacccttgctcagcttgtctacaatgaccagaggatggacaagcagtttgaacttaaagtttgggtccatgt 8471977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 7750551 - 7750427
Alignment:
Q  322 taataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttg 421  Q
    |||| ||||| |||||| ||  ||||||||||||||| ||  |||| |||||||| ||||| ||||||||| || |  ||||||||||||||||||||||    
T  7750551 taatcagtatagtgggtgtgattgggatgggtaagacaaccattgcccgacttgtttacaacgaccacaagatacatgagcaatttgaacttaaagcttg 7750452  T
Q  422 ggtccatgtttcagaatcttttgat 446  Q
    |||| ||||||||||||||||||||    
T  7750451 ggtctatgtttcagaatcttttgat 7750427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 446
Target Start/End: Original strand, 6590855 - 6590957
Alignment:
Q  344 tgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgtttcagaatctttt 443  Q
    ||||||||||||||| || ||||| || ||||| ||||| ||||||||| ||  | |||||||||||||||||||||||||| |||||||| ||||||||    
T  6590855 tgggatgggtaagacaacccttgcccggcttgtttacaaggaccacaagatactggagcaatttgaacttaaagcttgggtctatgtttcaaaatctttt 6590954  T
Q  444 gat 446  Q
    |||    
T  6590955 gat 6590957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 446
Target Start/End: Complemental strand, 5250682 - 5250569
Alignment:
Q  333 gtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgttt 432  Q
    |||||||| ||||| ||||||||||||||||||||||  ||||  ||||| ||||||| | |  || |||| ||||||||||||||||||||| ||||||    
T  5250682 gtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagcattttgaacttaaagcttgggtctatgttt 5250583  T
Q  433 cagaatcttttgat 446  Q
    ||||| ||||||||    
T  5250582 cagaaacttttgat 5250569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 333 - 446
Target Start/End: Original strand, 6448298 - 6448411
Alignment:
Q  333 gtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgttt 432  Q
    |||||||||||||||||||||||||||||| |||||   ||||| |||||| || ||| | || || |||| |||||||||||| |||||||| ||||||    
T  6448298 gtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatcttgggtctatgttt 6448397  T
Q  433 cagaatcttttgat 446  Q
    |||||| |||||||    
T  6448398 cagaatattttgat 6448411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 6519693 - 6519791
Alignment:
Q  348 atgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgtttcagaatcttttgat 446  Q
    |||||||| ||||| ||||||| || ||||||||||||| ||| |  | ||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  6519693 atgggtaaaaccacccttgctcaacatgtctacaatgacaacatgacaaagaagcattttgaacttaaagcatgggtctatgtttcagaatcttttgat 6519791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 228 - 446
Target Start/End: Complemental strand, 8455272 - 8455054
Alignment:
Q  228 gtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataa 327  Q
    |||||||| ||  ||||||||||| |||||| ||||||  | ||| ||||||| | ||| |||  || ||||||| |||||||||| ||     |||| |    
T  8455272 gtggatgagtcgagcatatatggtcgagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggttccaataatca 8455173  T
Q  328 gtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtcca 427  Q
    | || || ||| | || ||||||||||| ||||| ||||||   ||||| ||||||||| ||||| || || |||| |||||||||||||| |||||| |    
T  8455172 gcatagtcggtttaggagggatgggtaaaaccacccttgctaagcttgtgtacaatgacaacaagataaaggagcattttgaacttaaagcatgggtcta 8455073  T
Q  428 tgtttcagaatcttttgat 446  Q
    |||||||||||||||||||    
T  8455072 tgtttcagaatcttttgat 8455054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 446
Target Start/End: Original strand, 4388453 - 4388566
Alignment:
Q  333 gtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgttt 432  Q
    |||||||| ||||| ||||||||||||||||||||||  ||||| |||||||||| || | |  |  |||| ||||||||||||||||||||| | ||||    
T  4388453 gtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaatgaccgcaggatgaaagagcattttgaacttaaagcttgggtctacgttt 4388552  T
Q  433 cagaatcttttgat 446  Q
    ||||| ||||||||    
T  4388553 cagaaacttttgat 4388566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 442
Target Start/End: Complemental strand, 6736595 - 6736394
Alignment:
Q  241 gcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataagtattgtgggtct 340  Q
    |||||||||||||||||||||||||  | ||| ||||||| | ||| |||  || ||||||  |||||||||| ||     |||| || || |||||| |    
T  6736595 gcatatatggtagagatgatgataaggaaaaactaatcaagtttttacttacaggcaatgacagtggcaaccaggttccaataattagcatagtgggttt 6736496  T
Q  341 gggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgtttcagaatct 440  Q
     || |||||||| || ||||| ||||||   ||||| ||||| ||| ||||| || ||||||| |||||||||||||| |||||| ||||||||||||||    
T  6736495 aggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgggtctatgtttcagaatct 6736396  T
Q  441 tt 442  Q
    ||    
T  6736395 tt 6736394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 289
Target Start/End: Original strand, 6838139 - 6838373
Alignment:
Q  58 acttcctttcaggttttactaatcgatttgaatctaggatcaaagatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaa 157  Q
    |||| ||||||| | | ||||||| ||||||||||||||||||||| ||| ||| || ||||||||  |||||  | ||||||| ||   |||||||||     
T  6838139 acttgctttcagctatcactaatccatttgaatctaggatcaaagagttgctaggcaagctaaaatatcttgcagagcaaaagggtgatttgggattgac 6838238  T
Q  158 ccaaagagcctgtactagt---gaaggtgcggttagattgaaatcctcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtaga 254  Q
     ||||||   || ||||||   ||||| ||||||||     |||||||||||||||  |||||||| ||||||||||||||||||| ||||  |||||||    
T  6838239 acaaagaagttgcactagttatgaaggcgcggttagcccacaatcctcaaaaagatctccaactgcatctttggtggatgaatcttccatacgtggtaga 6838338  T
Q  255 gatgatgataaaaataaaataatcaattatttgct 289  Q
    || | ||| ||| |  ||||||| || ||||||||    
T  6838339 gaaggtgaaaaagaagaaataattaactatttgct 6838373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 442
Target Start/End: Original strand, 6553849 - 6554063
Alignment:
Q  228 gtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataa 327  Q
    |||||||| ||  ||||||||||||| |||| ||||||  | ||| ||||||| | ||| |||  || |||||| ||||||||||  ||     |||| |    
T  6553849 gtggatgagtcaagcatatatggtagggatgttgataaggaaaaattaatcaagtttttacttgaaggcaatgacggtggcaaccgggttccaataatca 6553948  T
Q  328 gtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtcca 427  Q
    | || |||||| | || |||||||| || ||||| ||||||   ||||| ||||| ||| ||||| || ||||||| |||||||||||||| |||||| |    
T  6553949 gcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcattttgaacttaaagcatgggtcta 6554048  T
Q  428 tgtttcagaatcttt 442  Q
    |||||||||||||||    
T  6554049 tgtttcagaatcttt 6554063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 444
Target Start/End: Original strand, 13270093 - 13270215
Alignment:
Q  322 taataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttg 421  Q
    |||| ||||| |||||||||   ||||||||||||||  | |||||||  ||||| ||||||||||| | | || || |||| |||||| ||||||||||    
T  13270093 taatcagtatagtgggtctgatggggatgggtaagacagcccttgctcagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttg 13270192  T
Q  422 ggtccatgtttcagaatcttttg 444  Q
    |||| ||||| ||||||||||||    
T  13270193 ggtctatgttccagaatcttttg 13270215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 258
Target Start/End: Complemental strand, 5268830 - 5268644
Alignment:
Q  75 actaatcgatttgaatctaggatcaaagatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaaccaaagagcctgtacta 174  Q
    ||||||| |||||| |||||||||||||| ||| |||| | |||| |||| |||||  | |||||| || |||| ||||| || |||   || ||| |||    
T  5268830 actaatccatttgagtctaggatcaaagaattgctagagaagctagaatttcttgcaaaacaaaagcatatgcttggattaaaacaagacgcttgtgcta 5268731  T
Q  175 gt---gaaggtgcggttagattgaaatcctcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatg 258  Q
    ||   |||||||  ||||| | |||| ||| | | |||||||||||| | |||||||||||||||||  ||||||||||||||||||    
T  5268730 gtagtgaaggtggagttagttggaaacccttagatagattgccaactacatctttggtggatgaatccagcatatatggtagagatg 5268644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 443
Target Start/End: Complemental strand, 5299374 - 5299134
Alignment:
Q  203 aaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgat 302  Q
    |||||||||||||| | | |||||||||||||||||  |||||||||| ||||||| ||| ||| |  || ||| ||| | ||| ||||  ||||  |||    
T  5299374 aaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgacaaagaggaagtaaccaaatttttactttccgacatagat 5299275  T
Q  303 ggtggcaaccatgtgagcgtaataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagc 402  Q
    | |||| ||| |||     |||| || || |||||||| ||||| ||||| || ||||| ||||||| |||||| |||||| || ||| | || |||| |    
T  5299274 gctggcgaccgtgtaccaataatcagcatagtgggtctaggtggaatgggaaaaaccacccttgctcaacttgtgtacaataacaacatgatacagaaac 5299175  T
Q  403 aatttgaacttaaagcttgggtccatgtttcagaatctttt 443  Q
    | |||||||| ||||| |||||| ||||||| ||| |||||    
T  5299174 agtttgaactaaaagcctgggtctatgtttcggaaactttt 5299134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 446
Target Start/End: Complemental strand, 6947873 - 6947669
Alignment:
Q  242 catatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataagtattgtgggtctg 341  Q
    ||||||||||||||||||||||||  | ||  ||||||| | ||| |||  || ||||||  |||||||||| ||     |||| || || |||||| |     
T  6947873 catatatggtagagatgatgataaggacaagttaatcaagtttttacttgcaggcaatgacagtggcaaccaggttccaataatcagcatagtgggttta 6947774  T
Q  342 ggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgtttcagaatctt 441  Q
    || |||||||| || ||||| ||||||   ||||| ||||||||| ||||| ||||| |||| ||||| |||||| | |||||| | |||||||||||||    
T  6947773 ggagggatggggaaaaccacccttgctaagcttgtgtacaatgacaacaagatagaggagcattttgaccttaaaacatgggtctacgtttcagaatctt 6947674  T
Q  442 ttgat 446  Q
    |||||    
T  6947673 ttgat 6947669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 446
Target Start/End: Complemental strand, 8590347 - 8590129
Alignment:
Q  228 gtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataa 327  Q
    |||||||| ||  |||||||||||||||||| |||||| || ||| ||||||| | ||| |||  || ||||||| |||||||||  ||     |||| |    
T  8590347 gtggatgagtcgagcatatatggtagagatgttgataagaaaaaactaatcaagtttttacttgcaggcaatgatagtggcaaccgcgttccaataatca 8590248  T
Q  328 gtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtcca 427  Q
    | || || ||| | || |||||||| || ||||| ||||||   ||||| ||||| ||| ||||| ||||  |||| ||||| |||||||| |||||| |    
T  8590247 gcatagtcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtcta 8590148  T
Q  428 tgtttcagaatcttttgat 446  Q
    |||||| ||||||||||||    
T  8590147 tgtttctgaatcttttgat 8590129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 443
Target Start/End: Complemental strand, 6266243 - 6266122
Alignment:
Q  322 taataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttg 421  Q
    |||| ||||| |||||||||   ||||| ||||||||  | ||||| |  ||||| ||||||||||| | | || || |||| |||||| ||||||||||    
T  6266243 taatcagtatagtgggtctgacggggattggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttg 6266144  T
Q  422 ggtccatgtttcagaatctttt 443  Q
    |||||||||||||||| |||||    
T  6266143 ggtccatgtttcagaaactttt 6266122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 446
Target Start/End: Complemental strand, 6142779 - 6142711
Alignment:
Q  378 tacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgtttcagaatcttttgat 446  Q
    ||||||||||||| | || || |||||||||||||||| ||||||||||||||| ||  ||||||||||    
T  6142779 tacaatgaccacaggatacaggagcaatttgaacttaatgcttgggtccatgttccaagatcttttgat 6142711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 262
Target Start/End: Complemental strand, 5250960 - 5250753
Alignment:
Q  58 acttcctttcaggttttactaatcgatttgaatctaggatcaaagatttgttagacacgctaaaattgcttgctcatcaaaaggatgtgctgggattgaa 157  Q
    ||||| |||||  ||| ||||||| ||||||||||||||| ||||| ||| |||| | |||| |||| |||||  | ||||||||| |||| ||||||||    
T  5250960 acttcttttcatctttcactaatccatttgaatctaggattaaagaattgctagagaagctagaatttcttgcaaagcaaaaggatatgctcggattgaa 5250861  T
Q  158 ccaaagagcctgt----actagtgaaggtgcggttagattgaaatcctcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtag 253  Q
     ||  ||| || |    | |||||||||||  ||||| | |||| ||| | | ||||| |||||| |  ||||||||||||||||  |||||||||||||    
T  5250860 acat-gaggcttttgctagtagtgaaggtggcgttagttggaaacccttagatagatttccaactacagctttggtggatgaatcgagcatatatggtag 5250762  T
Q  254 agatgatga 262  Q
    ||||| |||    
T  5250761 agatggtga 5250753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 433
Target Start/End: Complemental strand, 6259706 - 6259595
Alignment:
Q  322 taataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttg 421  Q
    |||| ||||| |||||||||   ||||||||||||||  | ||||| |  ||||| ||||||||||| | | || || |||| |||||| ||||||||||    
T  6259706 taatcagtatagtgggtctgacggggatgggtaagacagcccttgcccagcttgtttacaatgaccataggatacaggagcagtttgaatttaaagcttg 6259607  T
Q  422 ggtccatgtttc 433  Q
    ||||||||||||    
T  6259606 ggtccatgtttc 6259595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 6900562 - 6900516
Alignment:
Q  400 agcaatttgaacttaaagcttgggtccatgtttcagaatcttttgat 446  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||    
T  6900562 agcattttgaaattaaagcttgggtccatgtttcggaatcttttgat 6900516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 446
Target Start/End: Complemental strand, 6917564 - 6917526
Alignment:
Q  408 gaacttaaagcttgggtccatgtttcagaatcttttgat 446  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  6917564 gaacttaaagcttgggtccatgattcagaatcttttgat 6917526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 345 - 446
Target Start/End: Original strand, 6479510 - 6479611
Alignment:
Q  345 gggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtccatgtttcagaatcttttg 444  Q
    |||||||| || ||||| ||||||   ||||| |||||  || ||||| ||||| | || |||||||||||||| |||||| ||||||||||||||| ||    
T  6479510 gggatggggaaaaccacccttgctaagcttgtgtacaacaacaacaagatagaggaacattttgaacttaaagcatgggtctatgtttcagaatcttatg 6479609  T
Q  445 at 446  Q
    ||    
T  6479610 at 6479611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 443
Target Start/End: Complemental strand, 6883056 - 6882935
Alignment:
Q  322 taataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttg 421  Q
    |||| ||||| |||||||||   |||||||||||||| ||||| || |  ||||| ||||||||| ||| | |   | |||| |||||||||||||||||    
T  6883056 taattagtatagtgggtctgatggggatgggtaagacaactctcgcccagcttgtttacaatgacgacatgatcacggagcattttgaacttaaagcttg 6882957  T
Q  422 ggtccatgtttcagaatctttt 443  Q
    |||  ||||| |||||||||||    
T  6882956 ggtgaatgttccagaatctttt 6882935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 5268569 - 5268514
Alignment:
Q  333 gtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgacca 388  Q
    |||||||| ||||| |||||||||||||| ||||||| ||| || |||||||||||    
T  5268569 gtgggtctcggtggaatgggtaagaccacccttgctcaactcgtgtacaatgacca 5268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 446
Target Start/End: Complemental strand, 5281130 - 5281084
Alignment:
Q  400 agcaatttgaacttaaagcttgggtccatgtttcagaatcttttgat 446  Q
    |||| ||||||| ||||||||||||| |||||||||||| |||||||    
T  5281130 agcattttgaacataaagcttgggtctatgtttcagaattttttgat 5281084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 6169709 - 6169648
Alignment:
Q  41 aaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaaag 102  Q
    |||||||||||  |||| ||| |||||||||| ||  |||||||||||||||||||| ||||    
T  6169709 aaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaag 6169648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 6246108 - 6246047
Alignment:
Q  41 aaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaaag 102  Q
    |||||||||||  |||| ||| |||||||||| ||  |||||||||||||||||||| ||||    
T  6246108 aaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaag 6246047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 6259972 - 6259911
Alignment:
Q  41 aaagggaaagacgcaacacttcctttcaggttttactaatcgatttgaatctaggatcaaag 102  Q
    |||||||||||  |||| ||| |||||||||| ||  |||||||||||||||||||| ||||    
T  6259972 aaagggaaagatacaacgctttctttcaggttctatcaatcgatttgaatctaggattaaag 6259911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 6838420 - 6838469
Alignment:
Q  336 ggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatga 385  Q
    ||| ||||||||||||| |||||||| |||||||  ||||||||||||||    
T  6838420 ggtttgggtgggatgggaaagaccacccttgctcagcttgtctacaatga 6838469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 196 - 446
Target Start/End: Original strand, 6572677 - 6572927
Alignment:
Q  196 aatcctcaaaaagattgccaactgcgtctttggtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttaga 295  Q
    ||||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||||||| | ||| ||| |  ||||||||||  ||||||||| | |    
T  6572677 aatcctcaaaaagatcgccaactgcatctctggtggataaatcttgcatatatggtagagagggtgagaaagaagaaataatcaaccatttgctttcata 6572776  T
Q  296 caatgatggtggcaaccatgtgagcgtaataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggta 395  Q
    ||| ||    | |||||| ||     |||| || || |||||| ||||||||||||| |||||||| |||||||  ||||||||||||||||| | | |     
T  6572777 caaagacaacgacaaccaagtatcaataatcagcatagtgggtttgggtgggatggggaagaccacccttgctcagcttgtctacaatgaccagaggatg 6572876  T
Q  396 gagaagcaatttgaacttaaagcttgggtccatgtttcagaatcttttgat 446  Q
    ||||| || ||||| |||||||||||||||||||| ||| |||| ||||||    
T  6572877 gagaaacagtttgaccttaaagcttgggtccatgtctcaaaatcatttgat 6572927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 442
Target Start/End: Original strand, 6888 - 7102
Alignment:
Q  228 gtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataa 327  Q
    |||||||| ||  ||||||||||||| |||| ||||||  | ||||||||||| | ||| |||  || ||||||  |||||||||| ||     |||| |    
T  6888 gtggatgagtcaagcatatatggtagggatgttgataaggaaaaaataatcaagtttttacttgaaggcaatgacagtggcaaccaggttccaataatca 6987  T
Q  328 gtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttgggtcca 427  Q
    | || |||||| | || |||||||| || ||||| ||||||   ||||| ||||| ||| ||||| || ||||||| |||||||||||||| |||||| |    
T  6988 gcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaaagacaacaagataaagaagcattttgaacttaaagcatgggtcta 7087  T
Q  428 tgtttcagaatcttt 442  Q
    |||||||||||||||    
T  7088 tgtttcagaatcttt 7102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 446
Target Start/End: Original strand, 35139893 - 35140017
Alignment:
Q  322 taataagtattgtgggtctgggtgggatgggtaagaccactcttgctcgacttgtctacaatgaccacaaggtagagaagcaatttgaacttaaagcttg 421  Q
    |||| |||||||||||||||   |||| ||||||||| || ||  | | |||||| ||||||||||| | | || |  |||| |||||| ||||||||||    
T  35139893 taatcagtattgtgggtctgatggggaagggtaagacaaccctaacccaacttgtttacaatgaccataggatacatgagcagtttgaatttaaagcttg 35139992  T
Q  422 ggtccatgtttcagaatcttttgat 446  Q
    |||||||||||| ||||||||||||    
T  35139993 ggtccatgtttctgaatcttttgat 35140017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University