View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19106_low_6 (Length: 454)

Name: NF19106_low_6
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19106_low_6
NF19106_low_6
[»] chr3 (4 HSPs)
chr3 (181-438)||(2108124-2108381)
chr3 (11-73)||(2107954-2108016)
chr3 (11-46)||(52708807-52708842)
chr3 (19-51)||(1320158-1320190)
[»] chr8 (10 HSPs)
chr8 (11-51)||(24577629-24577669)
chr8 (11-51)||(30440685-30440725)
chr8 (16-51)||(16598196-16598231)
chr8 (16-51)||(24730980-24731015)
chr8 (16-51)||(26377979-26378014)
chr8 (18-51)||(16598114-16598147)
chr8 (11-51)||(14130113-14130153)
chr8 (16-49)||(30442477-30442510)
chr8 (11-51)||(26374848-26374888)
chr8 (21-49)||(28263877-28263905)
[»] chr7 (14 HSPs)
chr7 (11-51)||(8916478-8916518)
chr7 (16-51)||(35814819-35814854)
chr7 (19-51)||(4133398-4133430)
chr7 (11-51)||(11000927-11000967)
chr7 (16-51)||(4955970-4956005)
chr7 (16-51)||(5934552-5934587)
chr7 (20-51)||(8915279-8915310)
chr7 (16-50)||(6451856-6451890)
chr7 (11-49)||(18790273-18790311)
chr7 (22-51)||(1365619-1365648)
chr7 (11-51)||(1369753-1369793)
chr7 (11-51)||(1786631-1786671)
chr7 (11-51)||(11228929-11228969)
chr7 (11-51)||(24840091-24840131)
[»] chr4 (10 HSPs)
chr4 (11-51)||(7634028-7634068)
chr4 (11-51)||(10494851-10494891)
chr4 (17-51)||(13991486-13991520)
chr4 (11-51)||(13990778-13990818)
chr4 (19-51)||(17255007-17255039)
chr4 (16-73)||(21433669-21433732)
chr4 (20-51)||(7635238-7635269)
chr4 (11-48)||(18689622-18689659)
chr4 (11-51)||(9260521-9260561)
chr4 (16-48)||(18657148-18657180)
[»] chr2 (8 HSPs)
chr2 (11-51)||(28737785-28737825)
chr2 (16-51)||(23457594-23457629)
chr2 (16-51)||(33051566-33051601)
chr2 (16-51)||(1218393-1218428)
chr2 (16-51)||(5171691-5171726)
chr2 (22-51)||(4184876-4184905)
chr2 (16-51)||(32163877-32163913)
chr2 (11-51)||(33053365-33053405)
[»] chr6 (5 HSPs)
chr6 (11-48)||(34373887-34373924)
chr6 (16-51)||(1127202-1127237)
chr6 (22-51)||(12882070-12882099)
chr6 (22-51)||(32361316-32361345)
chr6 (11-51)||(18727946-18727986)
[»] scaffold0251 (1 HSPs)
scaffold0251 (11-51)||(9650-9690)
[»] chr5 (2 HSPs)
chr5 (16-52)||(18252363-18252399)
chr5 (16-44)||(26140298-26140326)
[»] chr1 (7 HSPs)
chr1 (11-51)||(10927142-10927182)
chr1 (11-51)||(12944064-12944104)
chr1 (11-51)||(50713661-50713701)
chr1 (16-51)||(10925688-10925723)
chr1 (16-49)||(10928239-10928272)
chr1 (16-51)||(9030964-9031000)
chr1 (11-51)||(23987520-23987560)
[»] scaffold0024 (1 HSPs)
scaffold0024 (16-51)||(144023-144058)
[»] scaffold0240 (1 HSPs)
scaffold0240 (11-51)||(15995-16035)
[»] scaffold0090 (1 HSPs)
scaffold0090 (11-51)||(15165-15205)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 181 - 438
Target Start/End: Original strand, 2108124 - 2108381
Alignment:
Q  181 ctgctacatcacttttagtattttcaaatggatgcgaacttcaaacttcacaatatatgtttggattgaccaagaccataacttagaagaatttattaaa 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2108124 ctgctacatcacttttagtattttcaaatggatgcgaacttcaaacttcacaatatatgtttggattgaccaagaccataacttagaaaaatttattaaa 2108223  T
Q  281 gagaatttaagagatctgccgctaaatcgtgattccctcatctcttatttgaaactatatgaataagaaataagtgagtcatgattcaacgaaagatcaa 380  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||||||    
T  2108224 gagaacttaagagatctgccgctaaatcgtgattccctcatctcttatttgaaactagatgaataagaaataagtgagtcatgattcagtgcaagatcaa 2108323  T
Q  381 ctaaattttcattaataaacttattgaccaatccaaaaatatattatagagttcacct 438  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2108324 ctaaattttcattaataaacttattgaccaatcaaaaaatatattatagagttcacct 2108381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 2107954 - 2108016
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaatagcctcttagctacaactgttaa 73  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  2107954 cagagattgagaaaactctctaaaatactattgaatgaatagcttcttagctacaactgttaa 2108016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 52708842 - 52708807
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaat 46  Q
    |||| |||||||||||||||||||||||||||||||    
T  52708842 cagatattgagaaaactctctaaaatattattgaat 52708807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 1320158 - 1320190
Alignment:
Q  19 gagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||| |||||||||||||||||||||||||    
T  1320158 gagaaaattctctaaaatattattgaatgaata 1320190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 24577629 - 24577669
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  24577629 cagaaattgagaaaactctctaaaatattattgaatgaata 24577669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 30440725 - 30440685
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  30440725 cagaaattgagaaaactctctaaaatattattgaatgaata 30440685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 16598231 - 16598196
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  16598231 attgagaaaactctctaaaatattattgaatgaata 16598196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 24731015 - 24730980
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  24731015 attgagaaaactctctaaaatattattgaatgaata 24730980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 26378014 - 26377979
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  26378014 attgagaaaactctctaaaatattattgaatgaata 26377979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 16598147 - 16598114
Alignment:
Q  18 tgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||||    
T  16598147 tgagaaaactctctaaaatattattgaatgaata 16598114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 14130153 - 14130113
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  14130153 cagaaattgagaaaactctccaaaatattattgaatgaata 14130113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 30442510 - 30442477
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaa 49  Q
    |||||||||||||| |||||||||||||||||||    
T  30442510 attgagaaaactctttaaaatattattgaatgaa 30442477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 26374888 - 26374848
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||| ||||||||||||||| ||||||||||||||||    
T  26374888 cagaaattaagaaaactctctaaattattattgaatgaata 26374848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 28263877 - 28263905
Alignment:
Q  21 gaaaactctctaaaatattattgaatgaa 49  Q
    |||||||||||||||||||||||||||||    
T  28263877 gaaaactctctaaaatattattgaatgaa 28263905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 8916478 - 8916518
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  8916478 cagaaattgagaaaactctctaaaatattattgaatgaata 8916518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 35814854 - 35814819
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  35814854 attgagaaaactctctaaaatattattgaatgaata 35814819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 4133398 - 4133430
Alignment:
Q  19 gagaaaactctctaaaatattattgaatgaata 51  Q
    |||||||||||||||||||||||||||||||||    
T  4133398 gagaaaactctctaaaatattattgaatgaata 4133430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 11000927 - 11000967
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  11000927 cagaaattgggaaaactctctaaaatattattgaatgaata 11000967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 4955970 - 4956005
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4955970 attgagaaaactccctaaaatattattgaatgaata 4956005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 5934587 - 5934552
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    |||||||||| |||||||||||||||||||||||||    
T  5934587 attgagaaaattctctaaaatattattgaatgaata 5934552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Original strand, 8915279 - 8915310
Alignment:
Q  20 agaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||    
T  8915279 agaaaactctctaaaatattattgaatgaata 8915310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 6451856 - 6451890
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaat 50  Q
    ||||| |||||||||||||||||||||||||||||    
T  6451856 attgaaaaaactctctaaaatattattgaatgaat 6451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 18790273 - 18790311
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaa 49  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  18790273 cagaaattgagaaaactctctaaaatattactgaatgaa 18790311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 1365648 - 1365619
Alignment:
Q  22 aaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||    
T  1365648 aaaactctctaaaatattattgaatgaata 1365619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 1369793 - 1369753
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| |||||||||||||| |||||||||||||||| ||||    
T  1369793 cagaaattgagaaaactctataaaatattattgaattaata 1369753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 1786671 - 1786631
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| |||| |||||||||||||||||||||| ||||||||    
T  1786671 cagaaattgcgaaaactctctaaaatattatttaatgaata 1786631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 11228969 - 11228929
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||| ||||||||||||||||||||||| ||||||    
T  11228969 cagaaattgataaaactctctaaaatattattgagtgaata 11228929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 24840131 - 24840091
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||| ||| ||||    
T  24840131 cagaaattgagaaaactctctaaaatattattcaataaata 24840091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 7634068 - 7634028
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  7634068 cagaaattgagaaaactctctaaaatattattgaatgaata 7634028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 10494891 - 10494851
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  10494891 cagaaattgagaaaactctctaaaatattattgaatgaata 10494851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 13991486 - 13991520
Alignment:
Q  17 ttgagaaaactctctaaaatattattgaatgaata 51  Q
    |||||||||||||||||||||||||||||||||||    
T  13991486 ttgagaaaactctctaaaatattattgaatgaata 13991520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 13990778 - 13990818
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  13990778 cagaaattgaaaaaactctctaaaatattattgaatgaata 13990818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 17255007 - 17255039
Alignment:
Q  19 gagaaaactctctaaaatattattgaatgaata 51  Q
    |||||||||||||||||||||||||||||||||    
T  17255007 gagaaaactctctaaaatattattgaatgaata 17255039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 21433669 - 21433732
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata------gcctcttagctacaactgttaa 73  Q
    |||||||||| |||||||||||||||||||||||||      | ||||||||||||||||||||    
T  21433669 attgagaaaattctctaaaatattattgaatgaataaaacttgtctcttagctacaactgttaa 21433732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 7635269 - 7635238
Alignment:
Q  20 agaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||    
T  7635269 agaaaactctctaaaatattattgaatgaata 7635238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 18689622 - 18689659
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatga 48  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  18689622 cagaaattgagaaaactctataaaatattattgaatga 18689659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 9260561 - 9260521
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| |||||||||||| |||||||||| ||||||||||||    
T  9260561 cagaaattgagaaaactatctaaaatataattgaatgaata 9260521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 18657148 - 18657180
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatga 48  Q
    |||||||||||||| ||||||||||||||||||    
T  18657148 attgagaaaactctataaaatattattgaatga 18657180  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 28737825 - 28737785
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  28737825 cagaaattgagaaaactctctaaaatattattgaatgaata 28737785  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 23457629 - 23457594
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  23457629 attgagaaaactctctaaaatattattgaatgaata 23457594  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 33051601 - 33051566
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  33051601 attgagaaaactctctaaaatattattgaatgaata 33051566  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 1218393 - 1218428
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    |||||||||| |||||||||||||||||||||||||    
T  1218393 attgagaaaattctctaaaatattattgaatgaata 1218428  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 5171691 - 5171726
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5171691 attgagaaaactctctaaaatattatttaatgaata 5171726  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 4184905 - 4184876
Alignment:
Q  22 aaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||    
T  4184905 aaaactctctaaaatattattgaatgaata 4184876  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 32163877 - 32163913
Alignment:
Q  16 attgagaaaact-ctctaaaatattattgaatgaata 51  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32163877 attgagaaaacttctctaaaatattattgaatgaata 32163913  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 33053405 - 33053365
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||  ||||||||||||||||||||||||    
T  33053405 cagaaattgagaaaatcctctaaaatattattgaatgaata 33053365  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 34373887 - 34373924
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatga 48  Q
    |||| |||||||||||||||||||||||||||||||||    
T  34373887 cagaaattgagaaaactctctaaaatattattgaatga 34373924  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 1127237 - 1127202
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    |||||||||||||||||||||| |||||||||||||    
T  1127237 attgagaaaactctctaaaataatattgaatgaata 1127202  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 12882099 - 12882070
Alignment:
Q  22 aaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||    
T  12882099 aaaactctctaaaatattattgaatgaata 12882070  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 32361345 - 32361316
Alignment:
Q  22 aaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||    
T  32361345 aaaactctctaaaatattattgaatgaata 32361316  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 18727946 - 18727986
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  18727946 cagaaattgagaaaactctctaaaatataattgattgaata 18727986  T

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Target: scaffold0251 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 9690 - 9650
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  9690 cagaaattgagaaaactctctgaaatattattgaatgaata 9650  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 18252399 - 18252363
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaatag 52  Q
    |||||||||||||| ||||||||||||||||||||||    
T  18252399 attgagaaaactctttaaaatattattgaatgaatag 18252363  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 26140326 - 26140298
Alignment:
Q  16 attgagaaaactctctaaaatattattga 44  Q
    |||||||||||||||||||||||||||||    
T  26140326 attgagaaaactctctaaaatattattga 26140298  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 10927182 - 10927142
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  10927182 cagaaattgagaaaactctctaaaatattatttaatgaata 10927142  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 12944104 - 12944064
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  12944104 cagaaattgagaaaactctctaaaataatattgaatgaata 12944064  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 50713701 - 50713661
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  50713701 cagaaattgagaaaactctcaaaaatattattgaatgaata 50713661  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 10925723 - 10925688
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10925723 attgaaaaaactctctaaaatattattgaatgaata 10925688  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 10928272 - 10928239
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaa 49  Q
    |||||||||||||||||||||| |||||||||||    
T  10928272 attgagaaaactctctaaaatactattgaatgaa 10928239  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 9031000 - 9030964
Alignment:
Q  16 attgagaaaact-ctctaaaatattattgaatgaata 51  Q
    |||||||||||| ||||||||||||||||||||||||    
T  9031000 attgagaaaacttctctaaaatattattgaatgaata 9030964  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 23987560 - 23987520
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||| ||||||||||||||||||||| ||||||    
T  23987560 cagaaattgagataactctctaaaatattattgattgaata 23987520  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 144023 - 144058
Alignment:
Q  16 attgagaaaactctctaaaatattattgaatgaata 51  Q
    ||||||||||||||||||||||||||||||| ||||    
T  144023 attgagaaaactctctaaaatattattgaataaata 144058  T

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Target: scaffold0240 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 16035 - 15995
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||| |||||||||| |||||||||||||||||||||    
T  16035 cagaaatttagaaaactctataaaatattattgaatgaata 15995  T

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Target: scaffold0090 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 15165 - 15205
Alignment:
Q  11 cagagattgagaaaactctctaaaatattattgaatgaata 51  Q
    |||| ||||||||||  ||||||||||||||||||||||||    
T  15165 cagaaattgagaaaatcctctaaaatattattgaatgaata 15205  T

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