View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19106_low_9 (Length: 365)
Name: NF19106_low_9
Description: NF19106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19106_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 30702582 - 30702768
Alignment:
| Q |
10 |
ataatactggaatggggatattatttcagttgttcatcaactttttgtgatggaatataggatatgtattaaatgcactatgactactacactcaatcta |
109 |
Q |
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| T |
30702582 |
ataatactggaatgaggatattatttcagtttttcatcaactttttgtgatggaatataggatatgcattaattgcactatgactgctacactcaagcta |
30702681 |
T |
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| Q |
110 |
ttcatatttctacctattcaacatttggcttgaagttgattatttaaatgnnnnnnntgagtgaatttaatattgaatacactgtcaca |
198 |
Q |
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| T |
30702682 |
ttcgtatttctacctatttaacatttggcttgaagttgattatttaaatg--aaaaatgagtgaatttaatatcgaatatactgtcaca |
30702768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 30702785 - 30702870
Alignment:
| Q |
262 |
ctttcattgataagaactaaactattatcaaatgaaatcagtgcagataattagacattcaagattttgagctgggagattagaat |
347 |
Q |
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| T |
30702785 |
ctttcattgattagaactcaactattatcaaatgaaatcagtgcagataattagacattcaagattttgagctgggagattagaat |
30702870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 3512329 - 3512390
Alignment:
| Q |
264 |
ttcattgataagaactaaactattatcaaatgaaatcagtgcagataattagacattcaaga |
325 |
Q |
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| T |
3512329 |
ttcattgatgaggactaaactattatcaaatgaaatcagtgcagataattagaccttcaaga |
3512390 |
T |
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