View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19107_low_1 (Length: 577)
Name: NF19107_low_1
Description: NF19107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19107_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 7 - 561
Target Start/End: Original strand, 43489124 - 43489680
Alignment:
| Q |
7 |
tgagatgaattaggttttggtggtttggagcatacaatgttgttggtcctagagattgagctaggtaatgaatctccatgaggtgccataatagttgtat |
106 |
Q |
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| T |
43489124 |
tgagatgaattaggttttggtggtttggagcatacaatgttgttgctcctagagattgagctaggtaatgaatctccatgaggtgccataatagttgtat |
43489223 |
T |
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| Q |
107 |
ttgttagtaaga--atatgataaatgtgttatgaatattgaagaaactagctaggaggaacaatcttatttataatagttgtgttttgctactaagaatg |
204 |
Q |
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| T |
43489224 |
ttgttagtaagagaatatgataaatgtgttatgaatattgaagaaactagctaggaggaacaatcttatttataatagttgtgttttgctactaagaatg |
43489323 |
T |
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| Q |
205 |
tgagatgtgtggatgttagaaatgcaaatgtcagttttcaatgatcgtgaacttaattgctagatttttcaagaagatttatgaggtgaatgtgatgtat |
304 |
Q |
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| T |
43489324 |
tgagatgtgtggatgttagaaatgcaaatgtcagttttcaatgatcgtgaacttaattgctagatttttcaagaagatttatgaggtgaatgtgatgtat |
43489423 |
T |
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| Q |
305 |
cgtatagcttttagtgatatgtagttgtgtacatacttttaaatttcccatatgtcaatgctttactaccaagtgaacttccacgttggtagttgtgacc |
404 |
Q |
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| T |
43489424 |
cgtataacttttagtgatatgtagttgtgtacatacttttaaatttcccatatgtcaatgcttcactaccaagtgaacttccacgttggtagttgtgacc |
43489523 |
T |
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| Q |
405 |
tcaagaataaggtgatcaatgcatatgatttcattctatggctgataatttagttgaaaggcaaccacatacatgcgtgtggagagtttcatgtttcata |
504 |
Q |
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| T |
43489524 |
tcaagaataaggtgatcaatgtatatgatttcattctatggctgataatttagttgaaaggcaaccacatacatgcgtgtggagagtttcatgtttcata |
43489623 |
T |
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| Q |
505 |
gttatatggtctaagccctaaggtcatgtttgaacaacaccttaattaagtgtctat |
561 |
Q |
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| T |
43489624 |
gatatatggtctaagccctaaggtcatgtttgaataacaccttaattaagtgtctat |
43489680 |
T |
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