View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19107_low_2 (Length: 529)
Name: NF19107_low_2
Description: NF19107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19107_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Complemental strand, 55986772 - 55986368
Alignment:
| Q |
20 |
ttatcctccatcgatgtttttaaaatggcacagatgcctatgcataaataaattgagattgcttagggattagggatggacctttttattccttcttgcg |
119 |
Q |
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| T |
55986772 |
ttatcctccatcgatgtttttacaatggcacagatgcctatgcataaataaattgagattgcttagggattagagatggacctttttattccttcttgcg |
55986673 |
T |
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| Q |
120 |
tttgttgattctatggtgctccagagcatgtgattttctgtctggtatcactggaattactgaatgcctcaacgcaagtcgcaagacggcaattagtttg |
219 |
Q |
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| T |
55986672 |
tttgttgattctatggtgctccagagaatgtgattttctgtctggtatcactggaattactgaatgcctcaacgcaagtcgcaagacggcaattagtttg |
55986573 |
T |
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| Q |
220 |
tgtt-ttttattgttttgatttgctagttgtaattaattatgaagcattcaagtatttctgacctcagaaactcattgatgaacaatacgttgaatgttc |
318 |
Q |
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| T |
55986572 |
tgtttttttattgttttgatttgctagttgtaattaattatgaagca-tcaagtatttctgacctcagaaactcattgatgaacaatacgttgaatgttt |
55986474 |
T |
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| Q |
319 |
tggtactaatctttcgagagtatattatgtgcatttgcacctgtcctctttactttggtgaagtctaacatacgtatcttgcttttgttggtgttaaatg |
418 |
Q |
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| T |
55986473 |
cggtactaatctttcgagagtatgttatgtgcatttgcacctgtcctctttactttggtgaagtctaacatacctatcttgcttttgttggtgttaaatg |
55986374 |
T |
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| Q |
419 |
ttttat |
424 |
Q |
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|||||| |
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| T |
55986373 |
ttttat |
55986368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 55984764 - 55984679
Alignment:
| Q |
416 |
atgttttatttatgaactttatattgcataacattgatacatttataatgatgttttttaattgctttaatacactaactcgtgct |
501 |
Q |
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| T |
55984764 |
atgttttatttatgaactttatattgcataacattgatacatttataatgatgttttttaattgctttaatacactaactcgtgct |
55984679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 33552124 - 33552167
Alignment:
| Q |
222 |
ttttttattgttttgatttgctagttgtaattaattatgaagcat |
266 |
Q |
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| T |
33552124 |
ttttttattgttttgatttgctagttgt-attaattatgaagcat |
33552167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 31782213 - 31782281
Alignment:
| Q |
104 |
tttattccttcttgcgtttgttgattctatggtgctccagagcatgtgattttctgtctggtatcactg |
172 |
Q |
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||||||| | |||| |||||||||||||||||||||| || ||||| |||||| ||| || |||||||| |
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| T |
31782213 |
tttattcttgcttgtgtttgttgattctatggtgctctagcgcatgcgattttgtgtttgatatcactg |
31782281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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