View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19107_low_3 (Length: 389)
Name: NF19107_low_3
Description: NF19107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19107_low_3 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 373
Target Start/End: Complemental strand, 44147261 - 44146893
Alignment:
| Q |
5 |
ggtagattatacttgctttagttgtgtatctaattgaaaactaaatcatacaacaagaggaccctgcattatctgaatagtgcatagatttagcgagagt |
104 |
Q |
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| T |
44147261 |
ggtaaattaaacttgctttagttgtgtttctaattgaaaactaaatcatacaacaagaggaccctgcattatcttaatagtgcatagatttagcgagagt |
44147162 |
T |
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| Q |
105 |
caatattcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagct |
204 |
Q |
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| T |
44147161 |
caatattcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggcatcatgtaatcttacatcttttaattatttaatactagct |
44147062 |
T |
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| Q |
205 |
gtgttggattattgttaattggttaattatttctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttct |
304 |
Q |
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| T |
44147061 |
gtgttggattattgttaattggttaattattcctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttct |
44146962 |
T |
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| Q |
305 |
gcacgggcttggagctcgaacgcactcagctagcattttctctgccaacctcagctgggaaggcattag |
373 |
Q |
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| T |
44146961 |
gcacgggcttggagctcgaacgcactcagctagcattttctctgccaacctcagctgggaaggcattag |
44146893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 111 - 373
Target Start/End: Complemental strand, 7369 - 7116
Alignment:
| Q |
111 |
tcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagctgtgttg |
210 |
Q |
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| T |
7369 |
tcaatagcaacaaatagattcaatt--agta-tacacagataatggaggatggtgttatgtaataccacatctttgaagcatttcatactagctatgttg |
7273 |
T |
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| Q |
211 |
gattattgttaattggttaattatttctcaatcaa-tttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttctgcacg |
309 |
Q |
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| T |
7272 |
aattagtgtt-------taattattcttcaatcaactttccggcttgttgattcattttcttctctgcactaaatttgtggcaggaaaagtttctgcacc |
7180 |
T |
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| Q |
310 |
ggcttggagctcgaacgcactcagctagcattttctctgccaacctcagctgggaaggcattag |
373 |
Q |
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| T |
7179 |
gacttggagcttcaacgtgctgagctagcattctctgcaccaacctcagttgggaaggcattag |
7116 |
T |
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