View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19107_low_4 (Length: 359)
Name: NF19107_low_4
Description: NF19107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19107_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 13855150 - 13855481
Alignment:
| Q |
19 |
ccaccgccaaaatctacggctcatacgaagaagttcttgacgaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggc |
118 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |
|
|
| T |
13855150 |
ccaccgccaaagtctacggctcttacgaagaagttcttgacgaccctaatgttgacgctgtttacttgccgttaccgacgacgttacatgtgaaatgggc |
13855249 |
T |
|
| Q |
119 |
ggtggctgctgcaaagaaggggaagcatgtgttgcttgagaaaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgt |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13855250 |
ggtggctgctgcgaagaaggggaagcatgtgttgcttgagaaaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgt |
13855349 |
T |
|
| Q |
219 |
ggggtgcagtttatggatgggactatgtggatgcatcatcctagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
13855350 |
ggggtgcagtttatggatgggactatgtggatgcatcatccgagaacggaggtgatgaaggagtttttggaggatggggagaagtttggaaaggttaaat |
13855449 |
T |
|
| Q |
319 |
cggtatgtgtttgtgttttggttttgatgatgt |
351 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||| |
|
|
| T |
13855450 |
cggtatgtgtctgtgtttt-gttttgataatgt |
13855481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 13849360 - 13849692
Alignment:
| Q |
19 |
ccaccgccaaaatctacggctcatacgaagaagttcttgacgaccctaatgttgacgctgtttacttgccattactgacgacgttgcatgtgaaatgggc |
118 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||| |
|
|
| T |
13849360 |
ccaccgccaaaatctacggctcctatgaagaagttcttgatgaccctaatgttgacgctgtttacgtgccgttgccgactacgttgcatgtgaaatgggc |
13849459 |
T |
|
| Q |
119 |
ggtggctgctgcaaagaaggggaagcatgtgttgcttgagaaaccggtggcggttagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgt |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| | ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13849460 |
ggtggctgctgcgaagaaggggaagcatgttttgttagagaagccggtggctgtgagtgtgaaggagtttgatgagattgtgaaggtgtgtgaggagtgt |
13849559 |
T |
|
| Q |
219 |
ggggtgcagtttatggatgggactatgtggatgcatcatcctagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13849560 |
ggggtgcagtttatggatgggactatgtggatgcatcatcctagaacagaggtgatgaaggggtttttggaggatggagagaagtttggcaaggttaaat |
13849659 |
T |
|
| Q |
319 |
cggtatgtgtttgtgttttggttttgatgatgt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
13849660 |
cggtatgtgtttgtgttttggttttgataatgt |
13849692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 13760366 - 13760408
Alignment:
| Q |
223 |
tgcagtttatggatgggactatgtggatgcatcatcctagaac |
265 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
13760366 |
tgcagtatatggatgctactatgtggatgcatcatcctagaac |
13760408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University