View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19108_low_2 (Length: 459)
Name: NF19108_low_2
Description: NF19108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19108_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 39556649 - 39557081
Alignment:
| Q |
11 |
cagagactaatccttttgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaa |
110 |
Q |
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| T |
39556649 |
cagagactaatcctttcgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaa |
39556748 |
T |
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| Q |
111 |
gaagagcacaaataagggaaatgatgaatcaagctcaaccatgcacttttcttgaatttccatatcaagtaatggtaattgattaatttaatctctttaa |
210 |
Q |
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| T |
39556749 |
gaagagcacaaataagggaaatgatgaatcaagctcaaccatgcacttttcttgaatttccatatcaagtaatggtaattgattaatttaatctctttaa |
39556848 |
T |
|
| Q |
211 |
ttatcactcattatgtactatgctttgcctactaagatgatattgactcaaatgaggtgttagctagctaggatcgacttgcttgtgtattacttttatc |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39556849 |
ttatcactcattatgtactatgctttgcttactaagatgatattgactcaaatgaggtgttagctagctaggatcgacttgcttgtgtattacttttatc |
39556948 |
T |
|
| Q |
311 |
acaacctaaaacttattactatatatgaatctctaatatgatcttggtccgacggtggatctcataaactgacctattacaacatgttattggctcgtta |
410 |
Q |
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| T |
39556949 |
acaacctaaaacttattactatatatgaatctctaatatgatcttggtccgacggtggatctcataaactgacctattacaacatgttattggctcgtta |
39557048 |
T |
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| Q |
411 |
ccttttcttaatagcaaaatatacactaaaaaa |
443 |
Q |
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| T |
39557049 |
ccttttcttaatagcaaaatatacactaaaaaa |
39557081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 32002047 - 32002004
Alignment:
| Q |
72 |
tcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
115 |
Q |
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| T |
32002047 |
tcaagctaaggctagaggaattccttacaagaagaaaaagaaga |
32002004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 4863330 - 4863408
Alignment:
| Q |
37 |
gctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
115 |
Q |
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|||||||| ||||| ||| | || |||| |||||||||| | |||||||| || |||||||||| ||||||||||||| |
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| T |
4863330 |
gctattcgtgtttaccttcgtgaagttaaggagtgtcaatcaaaggctagagggatcccttacacaaagaaaaagaaga |
4863408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 30942143 - 30942248
Alignment:
| Q |
16 |
actaatccttttgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaagctaaggctaggggtatcccttacaagaagaaaaagaaga |
115 |
Q |
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|||||||||||||| || ||| | ||||| || || ||||| ||| |||| |||| ||||||||||||||| ||||| ||||| |||||||||||||| | |
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| T |
30942143 |
actaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaagctaaggctagaggtataccttataagaagaaaaagaaaa |
30942242 |
T |
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| Q |
116 |
gcacaa |
121 |
Q |
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|||||| |
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| T |
30942243 |
gcacaa |
30942248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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