View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19108_low_4 (Length: 360)
Name: NF19108_low_4
Description: NF19108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19108_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 46429725 - 46430063
Alignment:
| Q |
18 |
agagggaccatgactatctcattgatatacaaacatcaaattgcagctaatatcagttgaaaaaattgagtgctgatcaaacaaattacaatggaactct |
117 |
Q |
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| T |
46429725 |
agagggaccatgactatctcattgatatacaaacatcaaattgcagctaatatcagttgaaaaaactgagtgctgatcaaacaaattacaatggaactct |
46429824 |
T |
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| Q |
118 |
gattgaacattaagaagatgacactaaacaacttattattaccttcaactgttcataaacttcatatgcttgtttttctcattttccttagaccaaacaa |
217 |
Q |
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| T |
46429825 |
gattgaacattaagaagatgacactaaacaacttattattaccttcaactgttcataaacttcatatgcttgtttttctcattttccttagaccaaacaa |
46429924 |
T |
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| Q |
218 |
tcaactgaggaaaattctcatctacaagttattttgcac-------nnnnnnnttctcattctcaggatcacatgtaaacgaatagcggagtctcttctg |
310 |
Q |
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| T |
46429925 |
tcaactgaggaaaattctcatctacaagttattttgcacaaaaaatattctcattctcattctcaggatcacatgtaaacgaatagcggagtctcttctg |
46430024 |
T |
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| Q |
311 |
tacctgtatgccaatgtcacaagtctatacacttttcat |
349 |
Q |
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| T |
46430025 |
tacctgtatgccaatgtcacaagtttatacacttttcat |
46430063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 46434568 - 46434745
Alignment:
| Q |
37 |
cattgatatacaaacatcaaattgcagctaatatcagttgaaaaaatt-gagtgctgatcaaacaaattacaatggaactctgattgaacattaagaaga |
135 |
Q |
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| T |
46434568 |
catttatatacaaatatcacactgcagctactatcggtttaaaaagctcgagcgttgatcgaacaaattacaatggaattgtta----acattaagaaga |
46434663 |
T |
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| Q |
136 |
tgacactaaacaacttattattaccttcaactgttcataaacttcatatgcttgtttttctcattttccttagaccaaacaatcaactga |
225 |
Q |
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| T |
46434664 |
t-acactaaactacttattagtaccttcaactg-tcata------atatgcttgtttttcttatttttcctcgacaaagcaatcaactga |
46434745 |
T |
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