View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19109_high_10 (Length: 236)
Name: NF19109_high_10
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19109_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 50122102 - 50122322
Alignment:
| Q |
1 |
ctcagagcttgagtactctgacactgataatgaattcttcttcaacctcttaataatgttcaacttaagaggtggtggttgctcccttggcaaaagattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50122102 |
ctcagagcttgagtactctgacactgataatgaattcttcttcaacctcttaat---gttcaacttaagaggtggtggttgctcccttggcaaaagattg |
50122198 |
T |
|
| Q |
101 |
tagggaacctcccacctttgcttctttgcatcagttatgtgtaccctcaaacgactctcagtctcgtgcctgcaagaccgagaacatacatgtaaaagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50122199 |
tagggaacctcccacctttgcttctttgcatcagttatgtgtaccctcaaacgactctcagtctcgtgcctgcaagaccgagaacatacatgt-aaagtg |
50122297 |
T |
|
| Q |
201 |
ttaaaaatttcacgttgaatgtgat |
225 |
Q |
| |
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||||||||||||| ||||||||||| |
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| T |
50122298 |
ttaaaaatttcacattgaatgtgat |
50122322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 50112521 - 50112692
Alignment:
| Q |
1 |
ctcagagcttgagtactctgacactgataatgaattcttcttcaacctcttaataatgttcaacttaagaggtggtggttgctcccttggcaaaagattg |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||| |||||||||||| |||||||||| |
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| T |
50112521 |
ctcagagcttgagtgctctgacactgataatgaattcttcttcaacctcttaat---gttctgcttcaaaggtgatggttgctccctaggcaaaagatca |
50112617 |
T |
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| Q |
101 |
tagggaacctccca-cctttgcttctttgcatcagttatgtgtaccctcaaacgactctcagtctcgtgcctgcaa |
175 |
Q |
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|| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50112618 |
taaggaacctcccatcttttgctt-tttgcatcagttatgtgtaccctcaaacgactttcagtctcgtgcctgcaa |
50112692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 23930618 - 23930514
Alignment:
| Q |
71 |
ggtggtggttgctcccttggcaaaagattgtagggaacctcccacctttgcttctttgcatcagttatgtgtaccctcaaacgactctcagtctcgtgcc |
170 |
Q |
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||||||||||| || ||||| | ||| ||||| || || ||||| |||||||| |||||||| ||||||||||| || ||||| |||| || || |||| |
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| T |
23930618 |
ggtggtggttgttctcttgggataaggttgtatggtacttcccatctttgcttgtttgcatctgttatgtgtactcttaaacggttctctgtttcatgcc |
23930519 |
T |
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| Q |
171 |
tgcaa |
175 |
Q |
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||||| |
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|
| T |
23930518 |
tgcaa |
23930514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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