View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19109_high_3 (Length: 517)
Name: NF19109_high_3
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19109_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 8551493 - 8551120
Alignment:
| Q |
13 |
taggagtaacaagaagcattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcctagaatttcaaatgg |
112 |
Q |
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| T |
8551493 |
taggagtaacaagaaacattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcctagaatttcaaatgg |
8551394 |
T |
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| Q |
113 |
attttatctttgcatttattaatt----ggtgaacatatgtggtgtaataataaataatactgacatttgtttttgtttagtattgttattaattaagca |
208 |
Q |
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| T |
8551393 |
attttatctttgcatttattaattaattggtgaacatatgtggtgtaataataaataatactgacatttgtttttgtttagtattgttattaattaagca |
8551294 |
T |
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| Q |
209 |
aaaattgtaattggttgtttatcgaataaataaaagaactgctattccaacgctagaagctgtatatagtaatctg-nnnnnnnnnngttctaaccttct |
307 |
Q |
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| T |
8551293 |
aaaattgtaattggttgtttatcgaataaataaaagaactgctattccaacactagaagctgtatatagtaatctgtttttttttttgttctaaacttct |
8551194 |
T |
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| Q |
308 |
ccatatttgcaatttttcttataattattacacgttttttagtatagatgtacaatattataaggtgtactata |
381 |
Q |
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| T |
8551193 |
tcataattgcaatttttcctataattatgacacgttttttagtaaagatgtacaatattataaggtgtactata |
8551120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 8540997 - 8540896
Alignment:
| Q |
13 |
taggagtaacaagaagcattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcctagaatttcaaatgg |
112 |
Q |
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| T |
8540997 |
taggagtaacaagaagcattgtgggaaatgtggtaacaagtgtgacagtaaaggttcttgtgtttatgggatgtgcagctatgcctagaatttcaaatgg |
8540898 |
T |
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| Q |
113 |
at |
114 |
Q |
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| T |
8540897 |
at |
8540896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 8532727 - 8532635
Alignment:
| Q |
13 |
taggagtaacaagaagcattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcctagaattt |
105 |
Q |
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| T |
8532727 |
taggagtaacaagaaacattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcatagaattt |
8532635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 43246309 - 43246207
Alignment:
| Q |
13 |
taggagtaacaagaagcattgtgggaaatgtggtaacaagtgtgaaagtagaggttcttgtgtttatggaatgtgcagctatgcctagaatttcaaatgg |
112 |
Q |
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| T |
43246309 |
taggagtaacgagaagcattgtggaaaatgtggtaacaagtgtgacaatagaggttcatgtgtttatggaatgtgcagatatgcgtagaatttgatatgg |
43246210 |
T |
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| Q |
113 |
att |
115 |
Q |
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||| |
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| T |
43246209 |
att |
43246207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 43246129 - 43246051
Alignment:
| Q |
149 |
tggtgtaataataaataatactgacatttgtttttgtttagtattgttattaattaagcaaaaattgtaattggttgtttat |
230 |
Q |
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| T |
43246129 |
tggtgtaataataaataatatcgatatttgtttttgcttggtattgttat---ttaagcaaagaatgtaattggttgtttat |
43246051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 43245977 - 43245911
Alignment:
| Q |
309 |
catatttgcaatttttcttataattattacacgttttttagtatagatgtacaatattataaggtgta |
376 |
Q |
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| T |
43245977 |
catatttgcagtttttct-ataactattacatgtttcatagtaaacatgtacaatattataaggtgta |
43245911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 380 - 504
Target Start/End: Original strand, 18333727 - 18333850
Alignment:
| Q |
380 |
taattctttaaggcaagacaatttactaataggggaaggtccgtaggatagttttatatggtgcaataaagatacatggtatctannnnnnngttgatat |
479 |
Q |
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| T |
18333727 |
taattctttaatgcgagataatttactaaaaggggaaggtccataggatagttttttacagtgcaataaagttacatagtgtcta-ttttttgttgatat |
18333825 |
T |
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| Q |
480 |
aagaggtatttttatgggtttgcct |
504 |
Q |
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| T |
18333826 |
aagaggtattttcatgggtttgcct |
18333850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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