View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19109_high_4 (Length: 510)

Name: NF19109_high_4
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19109_high_4
NF19109_high_4
[»] chr1 (8 HSPs)
chr1 (5-492)||(49539949-49540437)
chr1 (5-141)||(49287520-49287659)
chr1 (249-362)||(6394816-6394930)
chr1 (284-351)||(6396664-6396731)
chr1 (49-99)||(37847378-37847428)
chr1 (303-376)||(26778588-26778661)
chr1 (58-145)||(41186213-41186300)
chr1 (73-147)||(47874086-47874159)
[»] chr4 (5 HSPs)
chr4 (225-378)||(46867209-46867362)
chr4 (237-352)||(51537051-51537165)
chr4 (265-378)||(20447390-20447503)
chr4 (249-378)||(46869050-46869179)
chr4 (280-333)||(16059703-16059756)
[»] chr8 (2 HSPs)
chr8 (225-336)||(45100221-45100332)
chr8 (223-378)||(7001252-7001407)
[»] chr7 (4 HSPs)
chr7 (249-369)||(47304387-47304507)
chr7 (266-331)||(32841476-32841541)
chr7 (426-484)||(20268882-20268940)
chr7 (308-373)||(31544709-31544774)
[»] scaffold0426 (1 HSPs)
scaffold0426 (249-377)||(4734-4862)
[»] scaffold0037 (1 HSPs)
scaffold0037 (225-365)||(34262-34402)
[»] chr3 (1 HSPs)
chr3 (285-377)||(1542330-1542422)
[»] chr2 (1 HSPs)
chr2 (224-316)||(14223044-14223136)
[»] chr5 (4 HSPs)
chr5 (290-365)||(23136666-23136741)
chr5 (225-295)||(2735103-2735173)
chr5 (225-299)||(14575026-14575099)
chr5 (443-483)||(14575284-14575324)
[»] chr6 (1 HSPs)
chr6 (225-366)||(10428200-10428341)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 5 - 492
Target Start/End: Complemental strand, 49540437 - 49539949
Alignment:
Q  5 ggtagattattctctagttgtgtgactggcacattatacactg--ctactcgtggtctttgtgtttcgatctatttcatttttgtttgccaataattagg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49540437 ggtagattattctctagttgtgtgactggcacattatacactgtgctactcgtggtctttgtgtttcggtctatttcatttttgtttgccaataattagg 49540338  T
Q  103 caatagaaggaaaaactttcaatggtttgtagtttcaatattagatagatattagataaaataaagaactgaaatcattaattagtatcaagaataattc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49540337 caatagaaggaaaaactttcaatggtttgtagtttcaatattagacagatattagataaaataaagaactgaaatcattaattagtatcgagaataattc 49540238  T
Q  203 agatgtgtatcagaattgaatggagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaa 302  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49540237 agatgtgtatcagaattgaatggagtgaataggcctttccgttcttaaatttgtatgcaccggtcaattgcatcccccaatattttgaaatagccaacaa 49540138  T
Q  303 gtccctgaattttataaatgtcaatcaatttagtcattctatcaagtctcgtcgttaacagtgctgatgtgtcacgctgacttggaagtcattcttaaat 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49540137 gtccctgaattttataaatgtcaatcaatttagtcattctatcaagtctcgccgttaacagtgctgatgtgtcacgctgacttggaagtaattcttaaat 49540038  T
Q  403 ttgannnnnnnnnnnnggacttctttttgaaataaaaattattacaaattgttacattgttaaatcaatccatgaattatttcattaaag 492  Q
    ||||            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49540037 ttga-ttttgttttttggacttctttttgaaatgaaaattattacaaattgttacattgttaaatcaatccatgaattatttcgttaaag 49539949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 49287520 - 49287659
Alignment:
Q  5 ggtagattattctctagttgtgtgactggcacattatacac--tgctactcgtggtctttgtgtttcgatctatttcatttttgtttgccaataattagg 102  Q
    |||||||||||| ||||||| |||||| | | |||||||||  || ||||   |||||||||||||||||||||||| ||| ||||||||||||||| |     
T  49287520 ggtagattattccctagttgagtgacttggatattatacaccgtgttacttcgggtctttgtgtttcgatctatttcctttctgtttgccaataatttga 49287619  T
Q  103 caatagaaggaaaaacttt-caatggtttgtagtttcaat 141  Q
    ||| || | |||||||||| ||||||||||||||||||||    
T  49287620 caaaagtaagaaaaactttgcaatggtttgtagtttcaat 49287659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 6394816 - 6394930
Alignment:
Q  249 aaatttgtatgcaccggtcaattgcatcccccaatttttt-gaaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaa 347  Q
    ||||||||||| | | ||||||| |||| ||  ||||||| ||||||||  | | |||| |||||||||||||||||||||||||||||| ||| |||||    
T  6394816 aaatttgtatgtatccgtcaatttcatcacctgattttttcgaaatagcttatatgtccgtgaattttataaatgtcaatcaatttagtccttccatcaa 6394915  T
Q  348 gtctcgtcgttaaca 362  Q
    |||||||||||||||    
T  6394916 gtctcgtcgttaaca 6394930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 6396731 - 6396664
Alignment:
Q  284 tttttgaaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaagtct 351  Q
    ||||| |||||||||||  ||| || ||||||||||||||||||||||||||||  || |||||||||    
T  6396731 tttttaaaatagccaacgcgtctctcaattttataaatgtcaatcaatttagtctctccatcaagtct 6396664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 37847378 - 37847428
Alignment:
Q  49 tactcgtggtctttgtgtttcgatctatttcatttttgtttgccaataatt 99  Q
    |||| |||||||||||||||  ||| |||||||||||||||||||||||||    
T  37847378 tacttgtggtctttgtgtttgcatccatttcatttttgtttgccaataatt 37847428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 26778588 - 26778661
Alignment:
Q  303 gtccctgaattttataaatgtcaatcaatttagtcattctatcaagtctcgtcgttaacagtgctgatgtgtca 376  Q
    |||||||||||||||||| ||||||||||||||||  ||  ||||||||||  ||||||| || |||| |||||    
T  26778588 gtccctgaattttataaacgtcaatcaatttagtctctccgtcaagtctcgcagttaacaatgttgatatgtca 26778661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 41186213 - 41186300
Alignment:
Q  58 tctttgtgtttcgatctatttcatttttgtttgccaataattaggcaatagaaggaaaaactttcaatggtttgtagtttcaatatta 145  Q
    ||||||||||| ||  |||||| ||||||||||||||||||| | | |  | || |||||||||  ||||||| ||||||||||||||    
T  41186213 tctttgtgttttgacatatttcctttttgtttgccaataatttgactaatgtagaaaaaacttttgatggtttatagtttcaatatta 41186300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 47874086 - 47874159
Alignment:
Q  73 ctatttcatttttgtttgccaataattaggcaatagaaggaaaaactttcaatggtttgtagtttcaatattaga 147  Q
    ||||||| |||||||||||||| |||| | | | || |||||||||||   ||||||||||||||||||||||||    
T  47874086 ctatttcctttttgtttgccaa-aattggactagagtaggaaaaacttgttatggtttgtagtttcaatattaga 47874159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 225 - 378
Target Start/End: Original strand, 46867209 - 46867362
Alignment:
Q  225 gagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtc 324  Q
    |||||||||||  |||| || ||||||||||||| || |||| ||||  ||| | |||||||| |||||||| |||| |||| | |||||||||||||||    
T  46867209 gagtgaataggtattttggtccttaaatttgtatacatcggttaattttatctctcaatttttcgaaatagcaaacacgtccttaaattttataaatgtc 46867308  T
Q  325 aatcaatttagtcattctatcaagtctcgtcgttaacagtgctgatgtgtcacg 378  Q
    |||||||||||||  |  ||||||||| | |||||||| ||||||| |||||||    
T  46867309 aatcaatttagtcccttcatcaagtcttgccgttaacaatgctgatatgtcacg 46867362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 51537051 - 51537165
Alignment:
Q  237 cttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtcaatcaatttagt 336  Q
    ||||||||  |||||||||||||||||| |||||| |||||  |||||||  |||||||  || | || | ||||||||||| |||||||||||||||||    
T  51537051 cttttcgtctttaaatttgtatgcaccgatcaatttcatccttcaatttta-gaaatagttaatacgttcttgaattttatagatgtcaatcaatttagt 51537149  T
Q  337 cattctatcaagtctc 352  Q
    |  |||||||||||||    
T  51537150 ccatctatcaagtctc 51537165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 20447503 - 20447390
Alignment:
Q  265 gtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaagtctcgtcgttaacagt 364  Q
    ||||||| |||||| ||||||||  ||||||| || | |||||||||| ||||||||||||||||||||||||  |   |||||||||  ||||||| ||    
T  20447503 gtcaatttcatccctcaatttttcaaaatagcaaatatgtccctgaatcttataaatgtcaatcaatttagtctcttcgtcaagtctcaccgttaaccgt 20447404  T
Q  365 gctgatgtgtcacg 378  Q
    ||||| || |||||    
T  20447403 gctgacgtttcacg 20447390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 378
Target Start/End: Complemental strand, 46869179 - 46869050
Alignment:
Q  249 aaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaag 348  Q
    |||||| ||||||| | |||||| |||||   |||||||  ||||||| || | |||  |||||||||||||||||||||||||||||  |||| ||||     
T  46869179 aaatttatatgcacagctcaatttcatcctttaatttttcaaaatagcaaataggtcattgaattttataaatgtcaatcaatttagtttttctgtcaaa 46869080  T
Q  349 tctcgtcgttaacagtgctgatgtgtcacg 378  Q
    |||  |||||||||||| |||  |||||||    
T  46869079 tctaatcgttaacagtgttgacatgtcacg 46869050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 16059756 - 16059703
Alignment:
Q  280 caattttttgaaatagccaacaagtccctgaattttataaatgtcaatcaattt 333  Q
    |||||| |||||||||| || ||||||||  |||| ||||||||||||||||||    
T  16059756 caatttgttgaaatagctaataagtccctatatttgataaatgtcaatcaattt 16059703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 45100332 - 45100221
Alignment:
Q  225 gagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtc 324  Q
    ||||||||| |  ||||| | |||||||||||||||||||||||||||||||||| |||| || ||||||||||| |  | |||||||||||| |||| |    
T  45100332 gagtgaatatgttttttcctccttaaatttgtatgcaccggtcaattgcatccccaaattattcgaaatagccaatatattcctgaattttatgaatgac 45100233  T
Q  325 aatcaatttagt 336  Q
    ||||||||||||    
T  45100232 aatcaatttagt 45100221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 378
Target Start/End: Complemental strand, 7001407 - 7001252
Alignment:
Q  223 tggagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatg 322  Q
    |||||||||||||| |||| ||  | ||||||||||||| | |||||||  |||||  ||||||||||| |||| || | || |||||||||||||||||    
T  7001407 tggagtgaataggcattttggtcttcaaatttgtatgcatcagtcaatttgatccctaaattttttgaattagcaaatacgttcctgaattttataaatg 7001308  T
Q  323 tcaatcaatttagtcattctatcaagtctcgtcgttaacagtgctgatgtgtcacg 378  Q
    | |||||||||||||  |  |||||||| |  |||||| |||| | ||||||||||    
T  7001307 ttaatcaatttagtctcttcatcaagtcccaccgttaagagtgttaatgtgtcacg 7001252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 369
Target Start/End: Complemental strand, 47304507 - 47304387
Alignment:
Q  249 aaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaag 348  Q
    ||||||| ||||| |||| |||| |||||| |||||||| ||||||||||| | |||  ||||  |||||||| ||||||| |||||||  || ||||||    
T  47304507 aaatttgcatgcatcggttaatttcatccctcaatttttcgaaatagccaatacgtctttgaaacttataaatatcaatcattttagtccctccatcaag 47304408  T
Q  349 tctcgtcgttaacagtgctga 369  Q
    |||||||||||||||||||||    
T  47304407 tctcgtcgttaacagtgctga 47304387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 32841541 - 32841476
Alignment:
Q  266 tcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtcaatcaat 331  Q
    |||||| | ||||||||||| | |||||||||||  | ||||||||||| ||||||||||||||||    
T  32841541 tcaatttcgtcccccaatttgtcgaaatagccaattaatccctgaatttgataaatgtcaatcaat 32841476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 484
Target Start/End: Complemental strand, 20268940 - 20268882
Alignment:
Q  426 tttttgaaataaaaattattacaaattgttacattgttaaatcaatccatgaattattt 484  Q
    ||||| ||| ||||||||||||||||||| ||| ||| ||||| |||| ||||||||||    
T  20268940 tttttaaaacaaaaattattacaaattgtcacactgtcaaatcgatccttgaattattt 20268882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 31544709 - 31544774
Alignment:
Q  308 tgaattttataaatgtcaatcaatttagtcattctatcaagtctcgtcgttaacagtgctgatgtg 373  Q
    ||||||||||||   |||||||||||||| ||||| ||||||||||  ||||||  ||||||||||    
T  31544709 tgaattttataatgttcaatcaatttagttattctgtcaagtctcgctgttaacgatgctgatgtg 31544774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 249 - 377
Target Start/End: Complemental strand, 4862 - 4734
Alignment:
Q  249 aaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaag 348  Q
    |||||||||||  |  ||||||| |||||| |||||||| ||||||||||| | |||  || |||||||||||||| |||||||||||   ||| |||||    
T  4862 aaatttgtatgtgcacgtcaatttcatccctcaatttttcgaaatagccaatacgtcattggattttataaatgtccatcaatttagtttgtctgtcaag 4763  T
Q  349 tctcgtcgttaacagtgctgatgtgtcac 377  Q
    |||||||||||||| |||| | |||||||    
T  4762 tctcgtcgttaacaatgctaacgtgtcac 4734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 365
Target Start/End: Original strand, 34262 - 34402
Alignment:
Q  225 gagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtc 324  Q
    |||||||||||| ||| | | ||| |||||| ||||||| ||||||| ||||| |  |||  | |||||||  || | ||||||||||||||  ||  ||    
T  34262 gagtgaataggcttttccatccttcaatttgcatgcaccagtcaatttcatcctcagattaatcgaaatagttaatacgtccctgaattttaccaagttc 34361  T
Q  325 aatcaatttagtcattctatcaagtctcgtcgttaacagtg 365  Q
    |||||||||||||  ||||||||||||| ||||||| ||||    
T  34362 aatcaatttagtctctctatcaagtctcatcgttaatagtg 34402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 377
Target Start/End: Complemental strand, 1542422 - 1542330
Alignment:
Q  285 ttttgaaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaagtctcgtcgttaacagtgctgatgtgtcac 377  Q
    ||||||||||| ||| | |||||| |||||||| ||||||| ||||||||||| |||||| ||||||   |||||||| || || ||||||||    
T  1542422 ttttgaaatagtcaatacgtccctaaattttatgaatgtcagtcaatttagtccttctattaagtctttccgttaacaatgttggtgtgtcac 1542330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 316
Target Start/End: Complemental strand, 14223136 - 14223044
Alignment:
Q  224 ggagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaatttta 316  Q
    |||||||||| || ||||||| ||| |||||||||||||||| ||||| | ||| | |||| || |||||||| || | |||| |||||||||    
T  14223136 ggagtgaataagctttttcgtccttcaatttgtatgcaccggacaatttcgtcctcaaattattcgaaatagctaaaatgtccatgaatttta 14223044  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 23136666 - 23136741
Alignment:
Q  290 aaatagccaacaagtccctgaattttataaatgtcaatcaatttagtcattctatcaagtctcgtcgttaacagtg 365  Q
    ||||||| || | ||| ||||||||||||||||||||| | ||||||| |||  ||||||||| || |||||||||    
T  23136666 aaatagcaaatacgtctctgaattttataaatgtcaataagtttagtctttccgtcaagtctcatcattaacagtg 23136741  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 2735103 - 2735173
Alignment:
Q  225 gagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatag 295  Q
    |||||||||||  |||| || ||| |||||||| ||||||||||||| ||| ||  |||||||||||||||    
T  2735103 gagtgaataggtttttttgtcctttaatttgtacgcaccggtcaatttcattcctaaattttttgaaatag 2735173  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 14575026 - 14575099
Alignment:
Q  225 gagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaa 299  Q
    ||||||||||||  |||||| || ||||||||| | | ||||||||| ||||||| ||||||| |||||||||||    
T  14575026 gagtgaataggctatttcgt-ctcaaatttgtacgtatcggtcaatttcatccccaaatttttcgaaatagccaa 14575099  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 14575284 - 14575324
Alignment:
Q  443 attacaaattgttacattgttaaatcaatccatgaattatt 483  Q
    |||||||||||||||||||| |||||||||| | |||||||    
T  14575284 attacaaattgttacattgtcaaatcaatccctaaattatt 14575324  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 366
Target Start/End: Original strand, 10428200 - 10428341
Alignment:
Q  225 gagtgaataggccttttcgttcttaaatttgtatgcaccggtcaattgcatcccccaattttttgaaatagccaacaagtccctgaattttataaatgtc 324  Q
    |||||||||||| ||| | | ||| |||||| |  |||| ||||||| ||||| | ||||  | |||||||  || | ||||||||||||||  ||  ||    
T  10428200 gagtgaataggcttttacatccttcaatttgcacacaccagtcaatttcatccgcaaattaatcgaaatagttaatacgtccctgaattttactaagttc 10428299  T
Q  325 aatcaatttagtcattctatcaagtctcgtcgttaacagtgc 366  Q
    |||||||||||||  ||| ||||||||| ||||||| |||||    
T  10428300 aatcaatttagtctctctgtcaagtctcatcgttaatagtgc 10428341  T

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