View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19109_high_6 (Length: 343)

Name: NF19109_high_6
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19109_high_6
NF19109_high_6
[»] chr2 (5 HSPs)
chr2 (166-340)||(31136589-31136763)
chr2 (166-340)||(31152276-31152450)
chr2 (17-136)||(31136794-31136913)
chr2 (17-136)||(31152126-31152245)
chr2 (17-136)||(31130278-31130397)
[»] chr1 (3 HSPs)
chr1 (20-121)||(24484682-24484783)
chr1 (20-134)||(24468169-24468284)
chr1 (237-284)||(49632286-49632333)
[»] chr4 (2 HSPs)
chr4 (183-257)||(43049934-43050008)
chr4 (237-279)||(44449522-44449564)
[»] chr7 (3 HSPs)
chr7 (232-284)||(8147236-8147288)
chr7 (235-279)||(7392359-7392403)
chr7 (235-279)||(32834356-32834400)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 166 - 340
Target Start/End: Complemental strand, 31136763 - 31136589
Alignment:
Q  166 ccaagtaacgcagtgactaaaatttaccattttcaagatgaataagtgagatgtctggtgttcaaaccttgcatataacaatgcatgttcctcctaattg 265  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||| ||||||||||| ||| |||||    
T  31136763 ccaagtaacgcagtgactagaatttaccattttcaagatgaataagtgaggtatctggggttcaaaccctgcatataaaaatgcatgttcttcccaattg 31136664  T
Q  266 agttacgctcacggaaacaccagactacttgaccttatatgnnnnnnnactatataacaatgcatgtcctttgct 340  Q
    |||||| ||||||| ||||||||||||||||||||||||||       |||||| ||||||||||||||||||||    
T  31136663 agttacactcacgggaacaccagactacttgaccttatatgtttttttactatacaacaatgcatgtcctttgct 31136589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 31152276 - 31152450
Alignment:
Q  166 ccaagtaacgcagtgactaaaatttaccattttcaagatgaataagtgagatgtctggtgttcaaaccttgcatataacaatgcatgttcctcctaattg 265  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||| ||||||||| ||||||||||| ||| |||||    
T  31152276 ccaagtaacgcagtgactagaatttaccattttcaagatgaataagtgaggtatctggggttcaaaccctgcatataaaaatgcatgttcttcccaattg 31152375  T
Q  266 agttacgctcacggaaacaccagactacttgaccttatatgnnnnnnnactatataacaatgcatgtcctttgct 340  Q
    |||||| ||||||| ||||||||||||||||||||||||||       |||||| ||||||||||||||||||||    
T  31152376 agttacactcacgggaacaccagactacttgaccttatatgtttttttactatacaacaatgcatgtcctttgct 31152450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 31136913 - 31136794
Alignment:
Q  17 aagattatgtgacaaataatgacatgttagagaatttgctcaacatctcttaagagaatggccaaaagatggacaacagaaagattaaacatttgtttct 116  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31136913 aagattatgtcacaaataatgacatgttagacaatttgctcaacatctctcaagagaatggccaaaagatggacaacacaaagattaaacatttgtttct 31136814  T
Q  117 tgtaattttctatccatccc 136  Q
    ||||||||||||||||||||    
T  31136813 tgtaattttctatccatccc 31136794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 31152126 - 31152245
Alignment:
Q  17 aagattatgtgacaaataatgacatgttagagaatttgctcaacatctcttaagagaatggccaaaagatggacaacagaaagattaaacatttgtttct 116  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31152126 aagattatgtcacaaataatgacatgttagacaatttgctcaacatctctcaagagaatggccaaaagatggacaacacaaagattaaacatttgtttct 31152225  T
Q  117 tgtaattttctatccatccc 136  Q
    ||||||||||||||||||||    
T  31152226 tgtaattttctatccatccc 31152245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 31130278 - 31130397
Alignment:
Q  17 aagattatgtgacaaataatgacatgttagagaatttgctcaacatctcttaagagaatggccaaaagatggacaacagaaagattaaacatttgtttct 116  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31130278 aagattatgtcacaaataatgacatgttagacaatttgctcaacatctctcaagagaatggccaaaagatggacaacacaaagattaaacatttgtttct 31130377  T
Q  117 tgtaattttctatccatccc 136  Q
    ||||||||||| ||||||||    
T  31130378 tgtaattttctctccatccc 31130397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 24484783 - 24484682
Alignment:
Q  20 attatgtgacaaataatgacatgttagagaatttgctcaacatctcttaagagaatggccaaaagatggacaacagaaagattaaacatttgtttcttgt 119  Q
    ||||||| || ||| ||||||||||||| | |||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  24484783 attatgtcaccaatgatgacatgttagatactttgcttaacatctctcaagagaatgcccaaaagatggacaacacaaagattaaacatttgtttcttgt 24484684  T
Q  120 aa 121  Q
    ||    
T  24484683 aa 24484682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 24468284 - 24468169
Alignment:
Q  20 attatgtgacaaataatgacatgttagagaatttgctcaacatctcttaagagaatggccaaaagatggacaacagaaagattaaacatttgtttcttgt 119  Q
    ||||||| ||||||  |||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||  | ||||||| ||||||||||||||||    
T  24468284 attatgtcacaaatggtgacatgttagacaatttgctcaacatctctcaagagaatggccaaatgatggacacaacaaagattcaacatttgtttcttgt 24468185  T
Q  120 -aattttctatccatc 134  Q
     |||||||| ||||||    
T  24468184 aaattttctctccatc 24468169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 49632333 - 49632286
Alignment:
Q  237 catataacaatgcatgttcctcctaattgagttacgctcacggaaaca 284  Q
    ||||||||||||||||| ||| | ||||||| ||||||||||||||||    
T  49632333 catataacaatgcatgtccctgccaattgagctacgctcacggaaaca 49632286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 43049934 - 43050008
Alignment:
Q  183 taaaatttaccattttcaagatgaataagtgagatgtctggtgttcaaaccttgcatataacaatgcatgttcct 257  Q
    ||||||||||| |||| ||||||||||| || ||||   || |||| |||| |||||||||||||||||||||||    
T  43049934 taaaatttaccttttttaagatgaataaatgggatgatgggggttcgaaccctgcatataacaatgcatgttcct 43050008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 44449522 - 44449564
Alignment:
Q  237 catataacaatgcatgttcctcctaattgagttacgctcacgg 279  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||    
T  44449522 catataacaatgcatgttcctgctaactgagttatgctcacgg 44449564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 8147236 - 8147288
Alignment:
Q  232 ccttgcatataacaatgcatgttcctcctaattgagttacgctcacggaaaca 284  Q
    |||||||||||||||||||||| ||| | ||||||| || |||||||||||||    
T  8147236 ccttgcatataacaatgcatgtccctgccaattgagctatgctcacggaaaca 8147288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 7392359 - 7392403
Alignment:
Q  235 tgcatataacaatgcatgttcctcctaattgagttacgctcacgg 279  Q
    ||||||||||||||||||||||| | ||||||| || ||||||||    
T  7392359 tgcatataacaatgcatgttcctgccaattgagctatgctcacgg 7392403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 32834356 - 32834400
Alignment:
Q  235 tgcatataacaatgcatgttcctcctaattgagttacgctcacgg 279  Q
    |||||||||||||||||||||||   |||||||||| ||||||||    
T  32834356 tgcatataacaatgcatgttcctatcaattgagttatgctcacgg 32834400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University