View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19109_low_1 (Length: 626)

Name: NF19109_low_1
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19109_low_1
NF19109_low_1
[»] chr5 (8 HSPs)
chr5 (21-383)||(29299506-29299866)
chr5 (382-610)||(29299132-29299357)
chr5 (173-329)||(16648435-16648591)
chr5 (218-351)||(3680491-3680624)
chr5 (191-343)||(40084781-40084933)
chr5 (191-270)||(27403086-27403165)
chr5 (224-329)||(10428292-10428397)
chr5 (286-366)||(25378845-25378925)
[»] chr2 (4 HSPs)
chr2 (53-336)||(44690900-44691183)
chr2 (65-345)||(44515450-44515730)
chr2 (175-315)||(38968807-38968947)
chr2 (231-327)||(38906440-38906536)
[»] chr6 (8 HSPs)
chr6 (170-340)||(11335770-11335940)
chr6 (220-327)||(21145430-21145537)
chr6 (236-335)||(9288870-9288969)
chr6 (236-348)||(9295801-9295913)
chr6 (198-336)||(24568353-24568491)
chr6 (223-327)||(8247203-8247303)
chr6 (227-348)||(17776421-17776542)
chr6 (176-315)||(14457129-14457268)
[»] chr4 (6 HSPs)
chr4 (230-367)||(47551279-47551416)
chr4 (176-274)||(31737315-31737413)
chr4 (175-336)||(29080894-29081055)
chr4 (231-366)||(46616129-46616264)
chr4 (223-351)||(55351261-55351389)
chr4 (223-282)||(8506535-8506594)
[»] chr7 (4 HSPs)
chr7 (215-320)||(6229945-6230050)
chr7 (182-348)||(12829292-12829462)
chr7 (236-329)||(41447965-41448058)
chr7 (225-345)||(44162436-44162557)
[»] chr3 (2 HSPs)
chr3 (215-351)||(48721260-48721396)
chr3 (221-320)||(49454613-49454712)
[»] chr1 (6 HSPs)
chr1 (224-351)||(23295306-23295433)
chr1 (191-336)||(24616226-24616371)
chr1 (224-336)||(40388080-40388192)
chr1 (160-345)||(6493276-6493461)
chr1 (192-269)||(9875572-9875649)
chr1 (221-282)||(40197970-40198031)
[»] chr8 (5 HSPs)
chr8 (191-311)||(25659758-25659878)
chr8 (215-336)||(29577078-29577199)
chr8 (221-312)||(4901663-4901754)
chr8 (160-258)||(13309737-13309835)
chr8 (173-282)||(44682272-44682381)
[»] scaffold0263 (1 HSPs)
scaffold0263 (298-336)||(8630-8668)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 21 - 383
Target Start/End: Complemental strand, 29299866 - 29299506
Alignment:
Q  21 attgtctacctttaatgaatgtcgattgggaagaagagataattgaattcattacaccggctaatctttttgccaacaccttagagagtaacttgtaaat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29299866 attgtctacctttaatgaatgtcgattgggaagaagagataattgaattcattacaccggctaatctttttgccaacaccttagagagtaacttgtaaat 29299767  T
Q  121 actaccaagtagagaaattggacgaaagtccttcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttggcacc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29299766 actaccaagtagagaaattggacgaaagtccttcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttggcacc 29299667  T
Q  221 acctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  29299666 acctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaagtaccaaaaccttttaaaaaaggcaaaattaaaaccatccggttccg 29299567  T
Q  321 aacttttattaccatcgctctctttcacaacaacttcaatctcctctcctgtaaatggtaata 383  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  29299566 aacttttattaccatcg--ctctttcacaacaacttcaatctcctctcctgtaaatggtaata 29299506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 382 - 610
Target Start/End: Complemental strand, 29299357 - 29299132
Alignment:
Q  382 tataagtttagcattctcatccatagatacttgagcaaacaggaccccatccaacttcggcctctcccacctctccatcttcacatgatttttaaaatag 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29299357 tataagtttagcattctcatccatagatacttgagcaaacaggaccccatccaacttcggcctctcccacctctccatcttcacatgatttttaaaatag 29299258  T
Q  482 tccaccactacccttctaatgtcactaggtgattgaacccacccaccatccacctttaacaccgtgacatgattccgagtcactctccccttaacacaat 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  29299257 tccaccactacccttctaatgtcactaggtgattgaacccacccaccatccacctttaacaccgtgacatgattccgagtca---gccccttaacacaat 29299161  T
Q  582 taagaaaatacttggtgcttgcatcacct 610  Q
    ||||||||||||||||  |||||||||||    
T  29299160 taagaaaatacttggtttttgcatcacct 29299132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 329
Target Start/End: Complemental strand, 16648591 - 16648435
Alignment:
Q  173 acctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcatta 272  Q
    ||||| |||||||||||||| ||| |||| || | || |||||||| |||  | || ||||| ||||||||||||||||||||||| |||| ||| || |    
T  16648591 accttagggatcaaagcgaccaaaaaagccaacatacctcttggcaacactccgttggcatggaattgatcaaacataatcctcacttcattctttatca 16648492  T
Q  273 aataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttat 329  Q
    |||||||||||   || | ||| | ||| ||| | |||||||| |||||||||||||    
T  16648491 aataccaaaactccttgataaatgtaaagttatacccatccggacccgaacttttat 16648435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 3680491 - 3680624
Alignment:
Q  218 accacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtc 317  Q
    |||||||||||| |||| ||||| ||||||||||| ||||  || | ||| || | ||||||||||  |||||  || ||||| |||||||||| ||| |    
T  3680491 accacctcattaccatggaattggtcaaacataattctcatttcgtgcttgataagataccaaaactctttaatgaacgcaaagttaaaaccattcggac 3680590  T
Q  318 ccgaacttttattaccatcgctctctttcacaac 351  Q
    ||| ||| || |||||||| |||||||| |||||    
T  3680591 ccggactcttgttaccatcactctctttgacaac 3680624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 343
Target Start/End: Complemental strand, 40084933 - 40084781
Alignment:
Q  191 acaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaa 290  Q
    |||||||| || || | |||| |||| | ||||||||| ||||| ||||| |||||||| || || |||||||  || || ||||||||||||   ||||    
T  40084933 acaaaatacgccaacatactttttggtaacacctcattcgcatgaaattggtcaaacattattcttacctcatgtttgatcaaataccaaaactccttaa 40084834  T
Q  291 aaaaggcaaaattaaaaccatccggtcccgaacttttattaccatcgctctct 343  Q
     ||| |||||||| ||||||||||| ||||  || ||| ||||||| ||||||    
T  40084833 caaacgcaaaattgaaaccatccggacccgggctcttactaccatcactctct 40084781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 27403165 - 27403086
Alignment:
Q  191 acaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcat 270  Q
    ||||||||||| ||||||||  |||||| |||||||||  |||| ||||||| ||| | |||| ||||||||| ||||||    
T  27403165 acaaaataagccaataaactctttggcaacacctcattgccatgaaattgataaaagaaaatcatcacctcattcttcat 27403086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 329
Target Start/End: Complemental strand, 10428397 - 10428292
Alignment:
Q  224 tcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaac 323  Q
    |||||| |||| ||||  ||||||||||| ||||||||  | || ||||| | |||||| ||||| | ||| || ||||| ||||||||||| |||| ||    
T  10428397 tcattaccatgaaattagtcaaacataattctcacctcccctttaattaagtgccaaaatcttttcacaaaagcgaaattgaaaccatccggacccggac 10428298  T
Q  324 ttttat 329  Q
    ||||||    
T  10428297 ttttat 10428292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 25378925 - 25378845
Alignment:
Q  286 tttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccatcgctctctttcacaacaacttcaatctcctc 366  Q
    |||||| || |||| ||| ||||||||||| |||| ||| |||| |||||| ||||| |||| ||| | ||||||||||||    
T  25378925 tttaaagaaagcaacattgaaaccatccggccccggactcttatcaccatcactctccttcaaaaccaattcaatctcctc 25378845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 53 - 336
Target Start/End: Complemental strand, 44691183 - 44690900
Alignment:
Q  53 gaagagataattgaattcattacaccggctaatctttttgccaacaccttagagagtaacttgtaaatactaccaagtagagaaattggacgaaagtcct 152  Q
    ||||| ||||| || ||||| |||||||| || || |||||||| |||||||| || || || |||| |||||| || |  |||||||||||  | ||||    
T  44691183 gaagaaataatcgagttcataacaccggccaacctctttgccaataccttagataggaatttataaagactaccgagcaaggaaattggacggtaatcct 44691084  T
Q  153 tcaacatcatcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataat 252  Q
    | |||  ||| || ||||| |||||||  |||||||| || ||||| || || | || ||| || ||||||||||||||||  |||||||| ||||| ||    
T  44691083 ttaaccccattggcgaggaaacctttgaaatcaaagcaacgaaatacgccaaaagacctctaggaaccacctcattagcatagaattgatcgaacattat 44690984  T
Q  253 cctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccatc 336  Q
    ||| ||||||||||| || |||||||||||   |||||| |||||||||||||| |||||||  ||||||||||||||||||||    
T  44690983 cctaacctcatccttgatcaaataccaaaattctttaaagaaggcaaaattaaagccatccgagcccgaacttttattaccatc 44690900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 65 - 345
Target Start/End: Original strand, 44515450 - 44515730
Alignment:
Q  65 gaattcattacaccggctaatctttttgccaacaccttagagagtaacttgtaaatactaccaagtagagaaattggacgaaagtccttcaacatcatcg 164  Q
    |||||||| |||||| | |||||||| |||||||||||||| || | ||||||||  |||| ||| |  || || ||||| || ||||| | || |||||    
T  44515450 gaattcatcacaccgaccaatcttttagccaacaccttagaaagaagcttgtaaaggctactaagcaacgagataggacggaaatccttaagcaccatcg 44515549  T
Q  165 gtgaggacacctttgggatcaaagcgacaaaataag-ctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcat 263  Q
    | ||||| ||||| ||||| || || ||||| |||| | || |||| | | || | ||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  44515550 gagaggagaccttagggattaaggccacaaagtaagacaaaaaaacctttaggaatcaccttattagaatggaattggtcaaacataatcctcacctcat 44515649  T
Q  264 ccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccatcgctctcttt 345  Q
    |||| |  ||||||||||||   || || || |||||||||||||||||||| |||| | ||||||||||||| || |||||    
T  44515650 cctttaacaaataccaaaactccttgaagaaagcaaaattaaaaccatccgggcccgga-ttttattaccatcactatcttt 44515730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 38968947 - 38968807
Alignment:
Q  175 ctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaa 274  Q
    ||||||||| ||||  |||||||| |  || ||||| || ||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| |||| |    
T  38968947 ctttgggattaaagtaacaaaataggacaaaaaactcctcggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttgattaga 38968848  T
Q  275 taccaaaaccttttaaaaaaggcaaaattaaaaccatccgg 315  Q
    ||| ||||   ||||| ||| |  |||||||||||||||||    
T  38968847 tacaaaaattctttaataaaagtgaaattaaaaccatccgg 38968807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 327
Target Start/End: Complemental strand, 38906536 - 38906440
Alignment:
Q  231 catgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaactttt 327  Q
    |||| ||||| ||||||||||| |||||||   |||  || |||| |||||| ||||||| ||| ||||||||||| |||| ||||||||| |||||    
T  38906536 catgaaattggtcaaacataattctcaccttcccctctatcaaatgccaaaagcttttaataaaagcaaaattaaatccatacggtcccgagctttt 38906440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 170 - 340
Target Start/End: Original strand, 11335770 - 11335940
Alignment:
Q  170 gacacctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttca 269  Q
    |||||||| || || ||||  ||||| ||||| ||||||||| ||||||||||||| || ||||| ||||||||||||| ||||| || ||| | |||||    
T  11335770 gacaccttcggaattaaagtcacaaagtaagccaataaactttttggcaccacctcgtttgcatgaaattgatcaaacaaaatccgcatctcgttcttca 11335869  T
Q  270 ttaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccatcgctc 340  Q
      ||||||||||||   |||| ||| | ||||||||||||||||||||||||||||||||| |||||||||    
T  11335870 acaaataccaaaactccttaataaaaggaaaattaaaaccatccggtcccgaacttttattcccatcgctc 11335940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 220 - 327
Target Start/End: Complemental strand, 21145537 - 21145430
Alignment:
Q  220 cacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtccc 319  Q
    ||||||||||| ||| |||||||||||||| ||||| | |||||||||||| | ||||||||||||||| ||| | ||||||||||| |||||||| |||    
T  21145537 cacctcattaggatggaattgatcaaacattatcctaatctcatccttcataagataccaaaaccttttgaaatacgcaaaattaaacccatccggaccc 21145438  T
Q  320 gaactttt 327  Q
    | ||||||    
T  21145437 ggactttt 21145430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 9288969 - 9288870
Alignment:
Q  236 aattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccat 335  Q
    |||||||||||||||||||||| | |||||||||| | ||||||||||   ||||  || ||||||||||||| |||||| |||||||||||||| ||||    
T  9288969 aattgatcaaacataatcctcatcccatccttcataagataccaaaactccttaatgaaagcaaaattaaaacaatccggccccgaacttttattcccat 9288870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 9295913 - 9295801
Alignment:
Q  236 aattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccat 335  Q
    ||||||||||||| |||||||||| |||||||||| | ||||||||||   ||||  || |||||||||||||||||||   | | ||||||||| ||||    
T  9295913 aattgatcaaacacaatcctcaccccatccttcataagataccaaaactccttaattaaagcaaaattaaaaccatccgtctctggacttttattcccat 9295814  T
Q  336 cgctctctttcac 348  Q
    | || ||||||||    
T  9295813 cactttctttcac 9295801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 198 - 336
Target Start/End: Complemental strand, 24568491 - 24568353
Alignment:
Q  198 aagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaac-cttttaaaaaagg 296  Q
    |||| ||||||| |||||| || ||||||||| | |  ||||||||||||| ||| | ||||||||| ||||| |||||||||||| |||||| |||| |    
T  24568491 aagccaataaacatcttggaactacctcattaccctaaaattgatcaaacaaaatgcgcacctcatctttcatcaaataccaaaactcttttataaaa-g 24568393  T
Q  297 caaaattaaaaccatccggtcccgaacttttattaccatc 336  Q
     |||||| || |||||    |||||||||||||| |||||    
T  24568392 aaaaattcaagccatctaaacccgaacttttattgccatc 24568353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 8247203 - 8247303
Alignment:
Q  223 ctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaa 322  Q
    |||||||||||| |||||||| |||| |||| ||||||||||||| | |||||||||||||   |  | ||| | ||||||||||||||||||  |||||    
T  8247203 ctcattagcatgaaattgatcgaacaaaatcatcacctcatcctt-aataaataccaaaac---tccacaaaagaaaaattaaaaccatccggctccgaa 8247298  T
Q  323 ctttt 327  Q
    |||||    
T  8247299 ctttt 8247303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 348
Target Start/End: Complemental strand, 17776542 - 17776421
Alignment:
Q  227 ttagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttt 326  Q
    |||||||| ||||||| ||| |  ||| ||||||||| ||| || | |||||||||    |||| ||| |||||||||||||||||||| |||| ||| |    
T  17776542 ttagcatgaaattgataaaaaaatatcatcacctcatacttgataagataccaaaattgcttaataaatgcaaaattaaaaccatccggacccggactct 17776443  T
Q  327 tattaccatcgctctctttcac 348  Q
    |||| ||||| ||||| |||||    
T  17776442 tattcccatcactctccttcac 17776421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 14457268 - 14457129
Alignment:
Q  176 tttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaat 275  Q
    ||||| |||||||| ||||||||||| || |||| ||| || | || ||| ||  |||  ||||| || |||||||||| ||||||  |||| || ||||    
T  14457268 tttggaatcaaagccacaaaataagccaacaaacctctaggaagcatctccttcccatcaaattggtcgaacataatccgcacctctcccttaatcaaat 14457169  T
Q  276 accaaaaccttttaaaaaaggcaaaattaaaaccatccgg 315  Q
    |||||||| |||| | ||| ||||| || |||||||||||    
T  14457168 accaaaactttttcacaaaagcaaagttgaaaccatccgg 14457129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 230 - 367
Target Start/End: Original strand, 47551279 - 47551416
Alignment:
Q  230 gcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttat 329  Q
    ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| || || |  || |||||||||||||||||| | |||||||| ||||    
T  47551279 gcatggaattgatcgaacataattctcacctcatccttcatcaaataccaaaatctcttgatgaaagcaaaattaaaaccatccagacccgaactcttat 47551378  T
Q  330 taccatcgctctctttcacaacaacttcaatctcctct 367  Q
    | ||||| || | |||||||||  | ||||||||||||    
T  47551379 tcccatcactttatttcacaacctcctcaatctcctct 47551416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 31737315 - 31737413
Alignment:
Q  176 tttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaa 274  Q
    ||||| |||||||| |||||||||||||| |  | | |||| |  |||||||||||||| ||||||||||| | |||||||||||||||||| ||||||    
T  31737315 tttggaatcaaagcaacaaaataagctaacatcccttttggtattacctcattagcatggaattgatcaaataaaatcctcacctcatccttgattaaa 31737413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 336
Target Start/End: Complemental strand, 29081055 - 29080894
Alignment:
Q  175 ctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaa 274  Q
    ||||||||| ||||| |||||||| || || |||||| |||| ||||||||||||||||| |||||||| ||||| || || |  |||| |||||  ||     
T  29081055 ctttgggattaaagccacaaaatatgccaacaaactttttggtaccacctcattagcatgaaattgatcgaacattattctaatttcattcttcaacaag 29080956  T
Q  275 taccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccatc 336  Q
    |||||||||   |||| ||| ||| ||||||| |||||||| |||   ||||||| ||||||    
T  29080955 taccaaaactccttaacaaacgcataattaaagccatccggccccaggcttttatcaccatc 29080894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 366
Target Start/End: Original strand, 46616129 - 46616264
Alignment:
Q  231 catgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttatt 330  Q
    |||| |||||||||||||| || ||||||||  | |||| ||||||||||||  | || | ||| ||||||||||||||||| || ||| |||||||||     
T  46616129 catggaattgatcaaacattattctcacctcccctttcaataaataccaaaatttcttcacaaaagcaaaattaaaaccatctggacccaaacttttatc 46616228  T
Q  331 accatcgctctctttcacaacaacttcaatctcctc 366  Q
    | |||| || || ||||| ||  ||||||| |||||    
T  46616229 atcatcactatccttcaccactccttcaatttcctc 46616264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 55351389 - 55351261
Alignment:
Q  223 ctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaa 322  Q
    |||||| ||||  ||||| ||||||||||| ||||| |||| ||| || |  | ||||||   ||||| ||| ||||||||||| |||||||| ||||      
T  55351389 ctcattcgcatagaattggtcaaacataattctcacttcatgcttgataaggtgccaaaattctttaataaaagcaaaattaaatccatccggacccggg 55351290  T
Q  323 cttttattaccatcgctctctttcacaac 351  Q
    |||||||||||||| || ||||| |||||    
T  55351289 cttttattaccatcactatctttgacaac 55351261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 8506535 - 8506594
Alignment:
Q  223 ctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaa 282  Q
    |||||||||||| ||||| || |||||||| |||||||||||||| || || ||||||||    
T  8506535 ctcattagcatggaattggtcgaacataattctcacctcatccttgatcaagtaccaaaa 8506594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 6230050 - 6229945
Alignment:
Q  215 ggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccg 314  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||| |||| ||| |||| |||||||||   ||| || || |||||||||||||||||||    
T  6230050 ggcaccacctcattaccatggaattgatcaaacataattctcacttcatgcttaattagataccaaaattctttcaagaaagcaaaattaaaaccatccg 6229951  T
Q  315 gtcccg 320  Q
    | ||||    
T  6229950 ggcccg 6229945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 348
Target Start/End: Original strand, 12829292 - 12829462
Alignment:
Q  182 atcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacata----atcctcacctcatccttcattaaatac 277  Q
    |||||||| |||||||| ||||| |||| | |||| |   |||||||  |||| |||||||||||||||    |||| |||||||||||| |||||||||    
T  12829292 atcaaagcaacaaaatacgctaacaaaccttttgggatttcctcattcccatgaaattgatcaaacatatataatccgcacctcatccttgattaaatac 12829391  T
Q  278 caaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccatcgctctctttcac 348  Q
    |||||    || | |||  ||||||||||||||||||  ||||||||||| || || || ||||| |||||    
T  12829392 caaaattccttcacaaaaccaaaattaaaaccatccgtccccgaacttttgttcccgtcactctccttcac 12829462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 41448058 - 41447965
Alignment:
Q  236 aattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttat 329  Q
    |||||||||||||| |||||||||||||  || || ||||||||||||   |||| ||| ||||| ||||| || ||||| |||||||||||||    
T  41448058 aattgatcaaacattatcctcacctcattttttatcaaataccaaaactccttaataaatgcaaagttaaacccgtccggacccgaacttttat 41447965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 44162557 - 44162436
Alignment:
Q  225 cattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaacctt-ttaaaaaaggcaaaattaaaaccatccggtcccgaac 323  Q
    |||| ||||| ||||||||||||||||| || || ||||| || || || ||||||||  |  |||| ||| |||||||||||||||||||||||||  |    
T  44162557 catttgcatgaaattgatcaaacataattctaacttcatctttaatcaagtaccaaaaaatccttaataaaagcaaaattaaaaccatccggtcccgggc 44162458  T
Q  324 ttttattaccatcgctctcttt 345  Q
    ||||||  |||||||| |||||    
T  44162457 ttttatccccatcgctatcttt 44162436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 215 - 351
Target Start/End: Complemental strand, 48721396 - 48721260
Alignment:
Q  215 ggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccg 314  Q
    |||||||||||||||||||| ||||||||||||||||| || |  |||| ||||| ||| ||||||||| | || | ||| |||||||||||  ||||||    
T  48721396 ggcaccacctcattagcatgaaattgatcaaacataattctaatttcattcttcaataagtaccaaaacttcttgacaaaagcaaaattaaagtcatccg 48721297  T
Q  315 gtcccgaacttttattaccatcgctctctttcacaac 351  Q
    | ||||  ||||||| |||||| | ||| ||||||||    
T  48721296 gccccgggcttttatcaccatcacactccttcacaac 48721260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 320
Target Start/End: Complemental strand, 49454712 - 49454613
Alignment:
Q  221 acctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccg 320  Q
    |||||||||||||  |||||||| ||||| || || |||||||| || || || ||||||||   ||||| ||| |||||||||||| ||||||| ||||    
T  49454712 acctcattagcataaaattgatcgaacatgattctaacctcatcttttatcaagtaccaaaattctttaataaaagcaaaattaaaagcatccggacccg 49454613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 23295306 - 23295433
Alignment:
Q  224 tcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaac 323  Q
    |||||| |||| ||||||||||| | ||| |||||||||| ||| || | |||||||||  | ||||| || |||||||||||||||||||||||||  |    
T  23295306 tcattaccatggaattgatcaaagaaaattctcacctcattcttaatgagataccaaaatttcttaaagaaagcaaaattaaaaccatccggtcccgggc 23295405  T
Q  324 ttttattaccatcgctctctttcacaac 351  Q
    | ||||||||||| ||||| || |||||    
T  23295406 tgttattaccatcactctccttaacaac 23295433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 191 - 336
Target Start/End: Original strand, 24616226 - 24616371
Alignment:
Q  191 acaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaa 290  Q
    ||||||||||| || | || | | |||| ||||||||||||||| ||||| ||||||||| | |||||||||| ||| || || |||||||||  |||||    
T  24616226 acaaaataagccaacatacatttaggcaacacctcattagcatggaattggtcaaacatagttctcacctcattcttgatcaagtaccaaaactctttaa 24616325  T
Q  291 aaaaggcaaaattaaaaccatccggtcccgaacttttattaccatc 336  Q
     ||| ||||||||||| ||||||||  ||| ||||||  |||||||    
T  24616326 caaaagcaaaattaaacccatccgggtccggacttttggtaccatc 24616371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 224 - 336
Target Start/End: Original strand, 40388080 - 40388192
Alignment:
Q  224 tcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaac 323  Q
    ||||||||||| |||||||| |||||||| || |||||||| || || || ||||||||   ||| | ||| || ||||||||||||||||| | || ||    
T  40388080 tcattagcatgaaattgatcgaacataattctaacctcatcttttatcaagtaccaaaattctttgataaatgcgaaattaaaaccatccggacacggac 40388179  T
Q  324 ttttattaccatc 336  Q
    |||||||||||||    
T  40388180 ttttattaccatc 40388192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 345
Target Start/End: Complemental strand, 6493461 - 6493276
Alignment:
Q  160 catcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacc 259  Q
    |||||| || || |||||||| || ||||| || |||||||  ||||| | | | |||| |||||| || ||||| |||||||| || | |||    |||    
T  6493461 catcggggatgatacctttggaattaaagccacgaaataagacaataatcctttaggcatcacctcgtttgcatgaaattgatcgaataaaatatggacc 6493362  T
Q  260 tcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccggtcccgaacttttattaccatcgctctcttt 345  Q
    |||||||||||||||| |||||||   || || || |||||||||||||||| ||| |||   |||||| | ||||| ||||||||    
T  6493361 tcatccttcattaaatgccaaaactccttgaagaacgcaaaattaaaaccatacggccccaggcttttagttccatcactctcttt 6493276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 9875572 - 9875649
Alignment:
Q  192 caaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttca 269  Q
    |||||||||| ||||||||  |||| | |||||||||| ||||  |||||||||| |  ||||||||||||| |||||    
T  9875572 caaaataagccaataaactctttgggaacacctcattaccatgatattgatcaaaaaatatcctcacctcattcttca 9875649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 40197970 - 40198031
Alignment:
Q  221 acctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaa 282  Q
    ||||||||| |||| ||||| ||||||||||| ||||||||||| || || || ||||||||    
T  40197970 acctcattaccatgaaattggtcaaacataattctcacctcatctttgatcaagtaccaaaa 40198031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 25659878 - 25659758
Alignment:
Q  191 acaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaa 290  Q
    ||||||||||| || | || ||| |||| ||||||||||||||| ||||| ||||||| ||| ||||| ||||| || |||||||||||||   |||| |    
T  25659878 acaaaataagccaacatacctctcggcaacacctcattagcatgaaattggtcaaacaaaattctcacttcatctttaattaaataccaaatttttttga 25659779  T
Q  291 aaaaggcaaaattaaaaccat 311  Q
     ||| ||||||||||| ||||    
T  25659778 caaaagcaaaattaaacccat 25659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 336
Target Start/End: Original strand, 29577078 - 29577199
Alignment:
Q  215 ggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatccg 314  Q
    ||||| |||||||||||||| ||||||| ||||||||| || | ||||| |||||  || |||||||||   || | ||| |||||||||||||||| ||    
T  29577078 ggcacaacctcattagcatggaattgatgaaacataattctaatctcattcttcaacaagtaccaaaactcctttacaaatgcaaaattaaaaccattcg 29577177  T
Q  315 gtcccgaacttttattaccatc 336  Q
    |  ||||||| |||||| ||||    
T  29577178 gctccgaactgttattatcatc 29577199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 4901754 - 4901663
Alignment:
Q  221 acctcattagcatgtaattgatcaaacataatcctcacctcatccttcattaaataccaaaaccttttaaaaaaggcaaaattaaaaccatc 312  Q
    ||||||||||| || ||||||||||||||||| || || |||||||| || |||||||||||  | || | ||| ||||| |||||||||||    
T  4901754 acctcattagcgtgaaattgatcaaacataattctaacttcatcctttatcaaataccaaaaattcttcacaaacgcaaagttaaaaccatc 4901663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 13309835 - 13309737
Alignment:
Q  160 catcggtgaggacacctttgggatcaaagcgacaaaataagctaataaacttcttg-gcaccacctcattagcatgtaattgatcaaacataatcctcac 258  Q
    |||| ||||||| ||||||||||| |  | |||||||||||||||||| || |||| | | ||||||||||||||| ||||| |||||||||||| ||||    
T  13309835 catcagtgaggatacctttgggataagcgtgacaaaataagctaataagct-cttgagaatcacctcattagcatggaattggtcaaacataatcttcac 13309737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 44682381 - 44682272
Alignment:
Q  173 acctttgggatcaaagcgacaaaataagctaataaacttcttggcaccacctcattagcatgtaattgatcaaacataatcctcacctcatccttcatta 272  Q
    |||||||| || ||||  |||||||| |  || ||||| || |||||||||||||| ||||| |||||||||||||| || ||||| |||| ||| || |    
T  44682381 acctttggaattaaagtaacaaaataggacaagaaactcctcggcaccacctcatttgcatgaaattgatcaaacatgattctcacatcatgcttgataa 44682282  T
Q  273 aataccaaaa 282  Q
     |||||||||    
T  44682281 gataccaaaa 44682272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 8630 - 8668
Alignment:
Q  298 aaaattaaaaccatccggtcccgaacttttattaccatc 336  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  8630 aaaattaaaaccatccggacccggacttttattaccatc 8668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University