View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19109_low_10 (Length: 238)
Name: NF19109_low_10
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19109_low_10 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 1928112 - 1927892
Alignment:
| Q |
18 |
ctagcctcctacaaagtgcattaaagttcaattaaataaataattttcatacatataaaaatattattatgnnnnnnnctattttgacatgtcaagagat |
117 |
Q |
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| T |
1928112 |
ctagcctcctacaaagtgcattaaagttcaatcaaataaataattttcatacatataaaaatattattatgtttttttctattttgacatgtcaagagat |
1928013 |
T |
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| Q |
118 |
gagtttaatagctataaactgattgagaatataaagtcttaacccttttttcaaattcctaatatttcattttgacttgttcnnnnnnnntaggtttata |
217 |
Q |
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| T |
1928012 |
gagtttaatagctataaactgattgagaatataaagtcttaacccttttttcaaattcctaatatttcattttgacttgttcaaaaaaaacaggtttata |
1927913 |
T |
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| Q |
218 |
ataatcattttacaatttttt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
1927912 |
ataatcattttacaatttttt |
1927892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 1942089 - 1942053
Alignment:
| Q |
18 |
ctagcctcctacaaagtgcattaaagttcaattaaat |
54 |
Q |
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|||||||||| ||||||||||||||||||||| |||| |
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| T |
1942089 |
ctagcctcctgcaaagtgcattaaagttcaatcaaat |
1942053 |
T |
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