View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19109_low_2 (Length: 599)
Name: NF19109_low_2
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19109_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 50122117 - 50121522
Alignment:
| Q |
1 |
gtactcaagctctgagcttgttttcagttacacttctgatccatttagctttgcagtgaaaaggaagtccaatggtgatactctttttgactccaattat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50122117 |
gtactcaagctctgagcttgttttcagttacacttctgatccatttagctttgcagtgaaaaggaagtccaatggtgatactctttttgactccaattat |
50122018 |
T |
|
| Q |
101 |
tctaatgagtcagactcatttcgtcctttagtcttcaaagaccaatacttagaaatttctaccaaattgcccaaaaatgcttctttgtatggtttaggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50122017 |
tctaatgagtcagactcatttcgtcctttagtcttcaaagaccaatacttagaaatttctaccaaattgcccaaaaatgcttctttgtatggtttaggag |
50121918 |
T |
|
| Q |
201 |
agaacacacaaccaaatggaatgaagttacatccaaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121917 |
agaacacacaaccaaatggaatgaagttacatccaaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatgg |
50121818 |
T |
|
| Q |
301 |
atcacatcctgtatacatggatctcagaaattatggtggaaaaccttatgcacatggtgttcttttattgaatagcaatggaatggatgtgttttacaaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50121817 |
atcacatcctgtatacatggatctcagaaattatggtggaaaaccttatgcacatggtgttcttttgttgaatagcaatggaatggatgtgttttacaaa |
50121718 |
T |
|
| Q |
401 |
gggaactctttgacatacaagattattggaggaatacttgatttttacttctttgcaggacctacgcctctgaatgttgttgatcagtacacatccttca |
500 |
Q |
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| T |
50121717 |
gggaactctttgacatacaagattattggaggaatacttgatttttacttctttgcaggacctacgcctctgaatgttgttgatcagtacacatccttca |
50121618 |
T |
|
| Q |
501 |
ttggaagaccagctccaatgccttattgggcttttggtatgattcacttttcactctttcttaaatcttagtcccatcattgtaatgcatattttc |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121617 |
ttggaagaccagctccaatgccttattgggcttttggtatgattcacttttcactctttcttaaatcttagtcccatcattgtaatgcatattttc |
50121522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 554
Target Start/End: Complemental strand, 50112534 - 50111983
Alignment:
| Q |
3 |
actcaagctctgagcttgttttcagttacacttctgatccatttagctttgcagtgaaaaggaagtccaatggtgatactctttttgactccaattattc |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50112534 |
actcaagctctgagcttgttttcagttacacttctgatccatttagctttgcagtgaaaaggaagtccaatggtgatactctttttgactccaatt---c |
50112438 |
T |
|
| Q |
103 |
taatgagtcagactcatttcgtcctttagtcttcaaagaccaatacttagaaatttctaccaaattgcccaaaaatgcttctttgtatggtttaggagag |
202 |
Q |
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| T |
50112437 |
taatgagtcagacccatttggtccattggtcttcaaagaccaatacttggaaatttctactaaacttcccaaagatgcttctctgtatggtttgggagag |
50112338 |
T |
|
| Q |
203 |
aacacacaaccaaatggaatgaagttacatccaaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatggat |
302 |
Q |
| |
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||| |||| ||| |||| || ||||| |||| ||||||||||| ||||||||||| |||||| || |||| ||||| ||||| ||||| ||||||| | |
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| T |
50112337 |
aactcacagccacatgggataaagttgtatcctaatgatccttatactttgtataccactgatgtagcagccattaatctcaacactgatctatatgggt |
50112238 |
T |
|
| Q |
303 |
cacatcctgtatacatggatctcagaaattatg---gtggaaaaccttatgcacatggtgttcttttattgaatagcaatggaatggatgtgttttacaa |
399 |
Q |
| |
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| |||||||||||||||||||| |||||| ||| |||| || ||| |||||||||||||| | || |||||||||||||||||||||||||||||||| |
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| T |
50112237 |
ctcatcctgtatacatggatcttagaaatcatgaaggtggcaagcctaatgcacatggtgttttgttgttgaatagcaatggaatggatgtgttttacaa |
50112138 |
T |
|
| Q |
400 |
agggaactctttgacatacaagattattggaggaatacttgatttttacttctttgcaggacctacgcctctgaatgttgttgatcagtacacatccttc |
499 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
50112137 |
agggacctctttgacgtacaagattattggaggggtacttgatttttacttctttgcaggacccacgcctcttagtgttgttgatcagtacacatccttc |
50112038 |
T |
|
| Q |
500 |
attggaagaccagctccaatgccttattgggcttttggtatgattcacttttcac |
554 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
50112037 |
attggaagaccagctccaatgccttactgggcttttggtatgattcacttttcac |
50111983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 134 - 544
Target Start/End: Original strand, 23930800 - 23931210
Alignment:
| Q |
134 |
ttcaaagaccaatacttagaaatttctaccaaattgcccaaaaatgcttctttgtatggtttaggagagaacacacaaccaaatggaatgaagttacatc |
233 |
Q |
| |
|
|||||||||||||| | || ||||| || ||||| || ||| |||| ||||| |||||||| |||||||| ||||||||| |||| || || ||| ||| |
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| T |
23930800 |
ttcaaagaccaatatcttgagatttcaacaaaattacctaaagatgcatctttatatggtttgggagagaatacacaaccacatgggattaaattatatc |
23930899 |
T |
|
| Q |
234 |
caaatgatccttacactttgtatacaactgatatatcagctattaacctcaattctgatttatatggatcacatcctgtatacatggatctcagaaatta |
333 |
Q |
| |
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||| ||| ||||| ||||| |||||||| ||||| ||||||||||| || ||| |||||||||||||||| |||||| | || |||||||| |||||| | |
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| T |
23930900 |
caagtgacccttatactttatatacaacagatatttcagctattaatcttaatgctgatttatatggatctcatcctatgtatatggatctgagaaataa |
23930999 |
T |
|
| Q |
334 |
tggtggaaaaccttatgcacatggtgttcttttattgaatagcaatggaatggatgtgttttacaaagggaactctttgacatacaagattattggagga |
433 |
Q |
| |
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|||||||||| ||| |||||||| |||| | || |||||||| |||||||||||||||||||| ||||| | |||||||| || ||| ||||||| || |
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| T |
23931000 |
tggtggaaaagcttctgcacatgctgttttgttgttgaatagtaatggaatggatgtgttttataaaggaacttctttgacttataaggttattggtggt |
23931099 |
T |
|
| Q |
434 |
atacttgatttttacttctttgcaggacctacgcctctgaatgttgttgatcagtacacatccttcattggaagaccagctccaatgccttattgggctt |
533 |
Q |
| |
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| |||||||||||||||| | ||||| || ||| ||||||| ||||||||||| || | || ||||||||||||||| | |||||||| ||||||| |
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| T |
23931100 |
gtttttgatttttacttcttctctggaccaactcctttgaatgtggttgatcagtatactactttgattggaagaccagctgctatgccttactgggctt |
23931199 |
T |
|
| Q |
534 |
ttggtatgatt |
544 |
Q |
| |
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||||||||||| |
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|
| T |
23931200 |
ttggtatgatt |
23931210 |
T |
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