View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19109_low_5 (Length: 353)
Name: NF19109_low_5
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19109_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 45648319 - 45648654
Alignment:
| Q |
1 |
ttagttaaatgaatgacaacttggaatttaagtaactacagttaattatatttagacgtcattctgtaagaaaacagatagaagtttatgattgatcata |
100 |
Q |
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| T |
45648319 |
ttagttaaatgaatgacaacttggaatttaagtaactacaattaaatatatttagacgtcattctgtaagaaaacagatagaagtttatgattgatcata |
45648418 |
T |
|
| Q |
101 |
aggagatacttaattcctgcttcaaccactaactattgttgaataagtaacttatggttcacatcaaccacaacaaaagaaatcaatgtaatttaatgag |
200 |
Q |
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| T |
45648419 |
aggagatacttaattcctgcttcaaccactaactattgttgaataagtaacttatggttcacatcaaccacaacaaaagaaatcaatgtaatttaatgag |
45648518 |
T |
|
| Q |
201 |
tgcagaaggcaacaaatgaatgtgaaagaaaaaggagtgtgaagaataaagttaaatcatgatctaattttattatatatattattaccaccaaatggct |
300 |
Q |
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| T |
45648519 |
tgcagaaggcaacaaatgaatgtgaaagaaaaaggagtgtgaagaataaagttaaatcatgatctaattttattatatatattattaccaccaaatggct |
45648618 |
T |
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| Q |
301 |
gaaacagtctcccagaatttgcagagtgaatgcctt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
45648619 |
gaaacagtctcccagaatttgcagagtgaatgcctt |
45648654 |
T |
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