View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19109_low_7 (Length: 288)
Name: NF19109_low_7
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19109_low_7 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 3741186 - 3740920
Alignment:
| Q |
19 |
actcctaacacacaaatttgtggcttagtgtctatatatttgcttgtaatctaaacttttctcatcatccattacacatatatagaaactcttgtgtctt |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3741186 |
actcctaacacacaaatttgtggcttaatgtctatatatttgcttgtaatctaaacttttctcatcatccattacacata----gaaactcttgtgtctt |
3741091 |
T |
|
| Q |
119 |
atttgcagtttcaa-acagttttgtttctttacttcttgctttcttattacaatgaacttttgtgagcagactcccttgatattgaggttgtgggaagaa |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3741090 |
atttgcagtttcaatacagttttgtttctttacttcttgcttttttattacaatgaacttttgtgagcagactcccttgatattgaggttgtgggaagaa |
3740991 |
T |
|
| Q |
218 |
gtcacaatgatagagtttccctaggctagacatgtcgtatgataggtcgcagacaactgccgatctggtct |
288 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
3740990 |
gtcacaatgatagactttccctaggctagacatgtcgtatgataggtcgcaaacaactgtcgatttggtct |
3740920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 26269906 - 26269841
Alignment:
| Q |
167 |
acaatgaacttttgtgagcagactcccttgatattgaggttgtgg-gaagaagtcacaatgataga |
231 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||| ||||| |||||| || |||||||||||||||| |
|
|
| T |
26269906 |
acaatgaattcttgtgagtagactcccttgatcttgagattgtggaaaataagtcacaatgataga |
26269841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University