View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19109_low_8 (Length: 254)
Name: NF19109_low_8
Description: NF19109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19109_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 36956463 - 36956226
Alignment:
| Q |
16 |
aatactcgagtggaataatttgtcttgttaaacacaacatataaaggtccgaccgtacatgtatttgaaacttcataattaatgaaatcaaagtttgaaa |
115 |
Q |
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| T |
36956463 |
aatactcgagtggaataatttgtcttgttaaacacaacatataaaggtccgaccgtacatgtatttgaaacttcataattaatgaaatcaaagtttgaaa |
36956364 |
T |
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| Q |
116 |
agtaatcttgactcatagtatcatttcatgtttgacaccaaccnnnnnnncatatggtcccaattacactcataaatattagccttataaaaattaaatc |
215 |
Q |
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| T |
36956363 |
agtaatcttgactcatagtatcatttcatgtttgacaccaaccaaaaaaacatatggtcccaattacactcataaatattagccttataaaaattaaatc |
36956264 |
T |
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| Q |
216 |
agttcccataaattcatggatagatgttatgcactacct |
254 |
Q |
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| T |
36956263 |
aattcccat-aattcatggatagatgttatgcactacct |
36956226 |
T |
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