View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_12 (Length: 535)
Name: NF1910_high_12
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 26155945 - 26155562
Alignment:
| Q |
1 |
cttcaataacaacagcgatgctgtaagtaacaagaattccgggacacacacgtcggtcgtcttggacacgaatgtcaataacacgtgtgcctaaagcgag |
100 |
Q |
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|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155945 |
cttcaataacaacatccatgctgtaagtaacaagaattccgtgacacacacgtcggtcttcttggacacgaatgtcaataacacgtgtgcctaaagcgag |
26155846 |
T |
|
| Q |
101 |
ctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgttggtagcagaatcatgtgttcctggccataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155845 |
ctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgttggtagcagaatcatgtgttcctggccataca |
26155746 |
T |
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| Q |
201 |
atgtgattgatatgaacgttctctgggttgagaccattcatgcagtttttgctatctgatggatgatattcagaaccagggtagtcttctcctgaggttt |
300 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155745 |
atttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgatattcagaaccagggtagtcttctcctgaggttt |
26155646 |
T |
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| Q |
301 |
taagctcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgagacatgagagcccatcttcactg |
384 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26155645 |
taagttcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgatacatgagagcccatcttcactg |
26155562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 26169243 - 26168860
Alignment:
| Q |
1 |
cttcaataacaacagcgatgctgtaagtaacaagaattccgggacacacacgtcggtcgtcttggacacgaatgtcaataacacgtgtgcctaaagcgag |
100 |
Q |
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|||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169243 |
cttcaataacaacatccatgctgtaagtaacaagaattccgtgacacacacgtcggtcttcttggacacgaatgtcaataacacgtgtgcctaaagcgag |
26169144 |
T |
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| Q |
101 |
ctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgttggtagcagaatcatgtgttcctggccataca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169143 |
ctgtcgatagatagacaaagattggcattgagcaaaaggtcgagtgatgagtgggaaaccaatcttgttggtagcagaatcatgtgttcctggccataca |
26169044 |
T |
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| Q |
201 |
atgtgattgatatgaacgttctctgggttgagaccattcatgcagtttttgctatctgatggatgatattcagaaccagggtagtcttctcctgaggttt |
300 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169043 |
atttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgatattcagaaccagggtagtcttctcctgaggttt |
26168944 |
T |
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| Q |
301 |
taagctcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgagacatgagagcccatcttcactg |
384 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26168943 |
taagttcggttagagttttcttttcggtgtggattgtctttcttctttcaacttgttttgatacatgagagcccatcttcactg |
26168860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 425 - 520
Target Start/End: Complemental strand, 26155524 - 26155429
Alignment:
| Q |
425 |
gttatagttgttgtagctggactttgctgttcaacataaataataattcgttactttatattaaatatttcgttataaattatggcaatcaaacat |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26155524 |
gttatagttgttgtagctggactttgctgttcaacataaataataattcgttactttatattaaatatttcgttataaattatggcaatcaaacat |
26155429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 425 - 520
Target Start/End: Complemental strand, 26168822 - 26168727
Alignment:
| Q |
425 |
gttatagttgttgtagctggactttgctgttcaacataaataataattcgttactttatattaaatatttcgttataaattatggcaatcaaacat |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26168822 |
gttatagttgttgtagctggactttgctgttcaacataaataataattcgttactttatattaaatatttcgttataaattatggcaatcaaacat |
26168727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 376
Target Start/End: Original strand, 28095054 - 28095187
Alignment:
| Q |
243 |
cagtttttgctatctgatggatgatattcagaaccagggtagtcttctcctgaggttttaagctcggttagagttttcttttcggtgtggattgtctttc |
342 |
Q |
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|||||||| || |||||||| || || ||| |||||||||||| ||||||| || |||| || || | ||||||||||| ||| || |||||||| |||| |
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| T |
28095054 |
cagttttttctgtctgatgggtggtaatcacaaccagggtagttttctcctaagctttttagatcagatagagttttctcttctgtttggattgtttttc |
28095153 |
T |
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| Q |
343 |
ttctttcaacttgttttgagacatgagagcccat |
376 |
Q |
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| |||| | |||||| || || ||||| ||||| |
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| T |
28095154 |
gtttttcgatttgtttcgacacctgagaacccat |
28095187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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