View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_13 (Length: 530)
Name: NF1910_high_13
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 179 - 512
Target Start/End: Complemental strand, 48043734 - 48043408
Alignment:
| Q |
179 |
gggattccactgctggttctaggt-aataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg |
277 |
Q |
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| T |
48043734 |
gggattccactgctggttctaggttaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttg |
48043635 |
T |
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| Q |
278 |
atttcaaaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggaggga |
377 |
Q |
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| T |
48043634 |
atttcaaaaaatttgctttttttcaggatgtgctc--------cattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggaggga |
48043543 |
T |
|
| Q |
378 |
agtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaa |
477 |
Q |
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| T |
48043542 |
agtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaa |
48043443 |
T |
|
| Q |
478 |
cttctgccatatgaatctatttgaatgttacattg |
512 |
Q |
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| T |
48043442 |
cttctgccatatgaatctatttgaatgttacattg |
48043408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 184 - 405
Target Start/End: Complemental strand, 48051701 - 48051481
Alignment:
| Q |
184 |
tccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgtgatcctttgatttca |
283 |
Q |
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| T |
48051701 |
tccactgctggttctaagtaacaagattgataaacctggggatttgtctaagcaagacctgacagaaaaggtttaagtagtgtgtgatcctatgatttc- |
48051603 |
T |
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| Q |
284 |
aaaaatttgcnnnnnnncaggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggagggaagtttg |
383 |
Q |
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||| || || ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
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| T |
48051602 |
aaattttagcttttaatcaggatgtgtccgtacttgcctttcatatgatgttgtttcacatgtgcaggggactgaaatcaatatatgggaaggaagtttg |
48051503 |
T |
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| Q |
384 |
ttacatcatgatctcatgtaaa |
405 |
Q |
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||||||||||||||| |||||| |
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| T |
48051502 |
ttacatcatgatctcgtgtaaa |
48051481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 301 - 512
Target Start/End: Complemental strand, 48056836 - 48056626
Alignment:
| Q |
301 |
caggatgtgctcgtactttccattcatatgatgttgtttcacatgagcaggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcat |
400 |
Q |
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| T |
48056836 |
caggatgtgcttgtactttcctttcat-tgatgttgtttcacgtgcactggagactgaaatcaataaatgagagagaagtttgttgcatcatgatctcaa |
48056738 |
T |
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| Q |
401 |
gtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaagctctcaacttctgccatatgaatctatttg |
500 |
Q |
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|||||||||||| |||||| |||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| |
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| T |
48056737 |
gtaaaaactccaccaacatcgactcagttatttgttggtttgtaaaacattctaacgcaaagaactgaagctctcaacttctgccctaggattctatttg |
48056638 |
T |
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| Q |
501 |
aatgttacattg |
512 |
Q |
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|||||||||||| |
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| T |
48056637 |
aatgttacattg |
48056626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 48043968 - 48043874
Alignment:
| Q |
1 |
tatcatccatttttt-gtgctggaactagcaggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
94 |
Q |
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| T |
48043968 |
tatcatccatttttttgtgctggaactagcaggtatgatgttgatgcagccgcttatgagaatttacctgcttcaagaagtgaactccatgactt |
48043874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 512
Target Start/End: Complemental strand, 48051480 - 48051350
Alignment:
| Q |
370 |
gggagggaagtttgttacatcatgatctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacattctaaagcaaacaactgaa |
469 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||| |
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| T |
48051480 |
gggagggaagtttgttacatcatgatctcgtgtaaaaactccaacaacatggactcagttat------------aaaacattctaaagcaaacaattgaa |
48051393 |
T |
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| Q |
470 |
gctctcaacttctgccatatgaatctatttgaatgttacattg |
512 |
Q |
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| T |
48051392 |
gctctcaactcttgccatatgaatcaatttgaatgttacattg |
48051350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 348 - 512
Target Start/End: Complemental strand, 48037528 - 48037359
Alignment:
| Q |
348 |
caggggactgaaatcaatcaatgggagggaagtttgttacatcatgatctcatgtaaaaactccaacaac----attgactcagtaatttgtcggtttgt |
443 |
Q |
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|||||||||| |||| ||||||| || |||||||||| | ||||||||||||||||||||| || |||| ||||||||||| ||| || | ||||| |
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| T |
48037528 |
caggggactggaatccatcaatgaaagagaagtttgttgcttcatgatctcatgtaaaaacttcaccaacattaattgactcagttattagttgatttgt |
48037429 |
T |
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| Q |
444 |
aaaacattctaaagcaaacaactgaagctctc-aacttctgccatatgaatctatttgaatgttacattg |
512 |
Q |
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||| |||||||||||||| |||| |||||||| |||||||||| | |||||||||||||||||| ||||| |
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| T |
48037428 |
aaagcattctaaagcaaagaacttaagctctcaaacttctgccctgtgaatctatttgaatgttgcattg |
48037359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 48056968 - 48056891
Alignment:
| Q |
191 |
ctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgacaaaaaagatttaagtagtgtgt |
268 |
Q |
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| T |
48056968 |
ctggttcttggtaataagattgacaaacctggtgctttgtctaagcaagacacgacagaaaagatgtaagtactgtgt |
48056891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 512
Target Start/End: Complemental strand, 48045331 - 48045217
Alignment:
| Q |
395 |
tctcatgtaaaaactccaacaacattgactcagtaatttgtcggtttgtaaaacatt---ctaaagcaaacaactgaagctctcaacttctgccatatga |
491 |
Q |
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||||||||||||||| || |||||||| |||||| || || | ||||||||||||| |||||||||| |||| ||||||| ||||| ||||| |
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| T |
48045331 |
tctcatgtaaaaactacaccaacattggctcagttatgcgttgctttgtaaaacatttttctaaagcaaagaact------ctcaactcctgccctatga |
48045238 |
T |
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| Q |
492 |
atctatttgaatgttacattg |
512 |
Q |
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| T |
48045237 |
atctatttgaatgttgcattg |
48045217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 48045552 - 48045485
Alignment:
| Q |
180 |
ggattccactgctggttctaggtaataagattgacaaacctggggatttgtctaagcaagacctgaca |
247 |
Q |
| |
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|||||| | |||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||| |
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| T |
48045552 |
ggattcaattgctggttttaggtaataaaattgacaaacctgacaatttgtctaagcaagacccgaca |
48045485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 48043832 - 48043794
Alignment:
| Q |
96 |
aaagaatggagtgataagggtgatctcagattcaattcc |
134 |
Q |
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| T |
48043832 |
aaagaatggagtgataagggtgatctcagattcgattcc |
48043794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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