View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_14 (Length: 502)
Name: NF1910_high_14
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 49008040 - 49007671
Alignment:
| Q |
13 |
aaaatagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaacacccgcaacaacttttattctgtccaagttatcca |
112 |
Q |
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| T |
49008040 |
aaaatagatggaaacttagtttgaatgtaatatgttatatcctcagaactatttgatatgaaaacacccgcaacaacttttattctgtccaagttatcca |
49007941 |
T |
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| Q |
113 |
cttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttcttgctctgatgagttctttcaaattatcacatgagctcaagaaaaccat |
212 |
Q |
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| T |
49007940 |
cttgagtagcaagtgttcggttcttgtcttcacacaccacgatcttgtttcttgctctgatgagttctttcaaattatcacatgagctcaagaaaaccat |
49007841 |
T |
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| Q |
213 |
tgggaccttgcctgaagaaaaattccccggatagagagacaaaccagtgactttggctccatttccaagtgttaaatccccgtgaaattcacgatccatt |
312 |
Q |
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| T |
49007840 |
tgggaccttgcctgaagaaaaattccccggatagagagacaaaccagtgactttggctccatttccaagtgttaaatccccgtgaaattcacgatccatt |
49007741 |
T |
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| Q |
313 |
gtgccagcagcaactgttattaccta----agataaagttagttaattgttagtaaagggtgagttatgt |
378 |
Q |
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| T |
49007740 |
gtgccagcagcaactgttattacctattagagataaagttagttaattgttagtaaagggtgagttatgt |
49007671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 374 - 486
Target Start/End: Complemental strand, 49007622 - 49007510
Alignment:
| Q |
374 |
tatgtctaaacaaagtctttcgtatttattattgattaagctatcaataaatgagatacttcgataatattacccatggtgttccattgtggagagtttc |
473 |
Q |
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| T |
49007622 |
tatgtctaaacaaagtctttcgtatttattattgattaagctatcaataaatgagatacttcgataatattacccatggtgttccattgtggagagtttc |
49007523 |
T |
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| Q |
474 |
aagcactggtcct |
486 |
Q |
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| T |
49007522 |
aagcactggtcct |
49007510 |
T |
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