View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_25 (Length: 394)
Name: NF1910_high_25
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 40480716 - 40480373
Alignment:
| Q |
18 |
catttaggaaaatttgtttcatttgaaaagttacaagagtctatcttagcacacatacatatctacaactgttaattttacaactttatatataccaaaa |
117 |
Q |
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| T |
40480716 |
catttaggaaaatttgtttcatttgaaaagttacaagagtctatcttagcacacatacatatctacaactgttaattttacaactttata----ccaaaa |
40480621 |
T |
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| Q |
118 |
cctggtaattgacattacaactcaggttagaagagcgacaagataatgaagaatttgaaactggactgtgtttgtgactcagtggaaaactgcaacccac |
217 |
Q |
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| T |
40480620 |
cctggtaattgacattaaaactcgggttagaagagcaacaagataatgaagaatttgaaactggactgtgtttgtgactcagtggaaaactgcaacccac |
40480521 |
T |
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| Q |
218 |
aaagcttatatcatccacaacttgtgaagcctctatttccataagtgcctcac---nnnnnnnttcaacgtcacaaggaagccatagaggaccatcactt |
314 |
Q |
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| T |
40480520 |
aaagcttatatcatccacaacttgtgaagcctctatttccataagtgcctcacaaaaaaataattcaacgtcacaaggaagccatagaggaccatcactt |
40480421 |
T |
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| Q |
315 |
ttatatccatattcattttcaacatctactaaaagagttttaaaatat |
362 |
Q |
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| T |
40480420 |
ttatatccatattcattgtcaacatcttctaaaagagttttaaaatat |
40480373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 40466345 - 40466266
Alignment:
| Q |
279 |
tcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattttcaacatctactaaaagagttttaaa |
358 |
Q |
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| T |
40466345 |
tcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaa |
40466266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 40489327 - 40489248
Alignment:
| Q |
279 |
tcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattttcaacatctactaaaagagttttaaa |
358 |
Q |
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| T |
40489327 |
tcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaa |
40489248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 40472681 - 40472605
Alignment:
| Q |
279 |
tcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattttcaacatctactaaaagagtttt |
355 |
Q |
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| T |
40472681 |
tcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaagagtttt |
40472605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 40466512 - 40466401
Alignment:
| Q |
108 |
tataccaaaacctggtaattgacattacaactcaggttagaagagcgacaagataatgaagaatttgaaactggactgtgtttgtgactcagtggaaaac |
207 |
Q |
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| T |
40466512 |
tataccaaaatctcgtaattggcaacgcaactcaggttagaggagcgacaagacaatgaagaatgagaaa-tgggttgtgtttgtgaacaattggaaaat |
40466414 |
T |
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| Q |
208 |
tgcaacccacaaa |
220 |
Q |
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| T |
40466413 |
tgcaacccacaaa |
40466401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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