View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_high_26 (Length: 380)

Name: NF1910_high_26
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_high_26
NF1910_high_26
[»] chr4 (8 HSPs)
chr4 (7-364)||(5174668-5175021)
chr4 (7-227)||(5197409-5197629)
chr4 (7-364)||(4840501-4840854)
chr4 (7-227)||(5215554-5215774)
chr4 (7-290)||(4855078-4855360)
chr4 (7-226)||(5184010-5184229)
chr4 (7-227)||(5161727-5161949)
chr4 (284-364)||(5184282-5184362)
[»] chr2 (3 HSPs)
chr2 (254-364)||(36248934-36249042)
chr2 (254-364)||(19626634-19626742)
chr2 (254-364)||(19823535-19823643)
[»] chr7 (1 HSPs)
chr7 (254-361)||(4826657-4826762)
[»] chr6 (1 HSPs)
chr6 (254-364)||(16550098-16550206)
[»] chr1 (1 HSPs)
chr1 (254-363)||(23084053-23084160)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 5174668 - 5175021
Alignment:
Q  7 tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggc 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  5174668 tggacatgataactttttattggagtttcacagcatcttacataacaatattgttggccctcataacagttttgtgcatcaatccacgttggcgtatggc 5174767  T
Q  107 ctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtc 206  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||      ||| ||||||||| |||||||    
T  5174768 ctggttttattatatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagagtgtccata------gtttaaactttatgtggagtc 5174861  T
Q  207 tcaaatatttggatattgtaannnnnnnctttagctttga-tttcgaca-gtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgtt 304  Q
    |||||||||||||||||||||       |||||||||| | |||||| | ||| |   |||||| |||  |||||||| ||||||||||||||||||| |    
T  5174862 tcaaatatttggatattgtaatttttacctttagctttaattttcgagatgttgagacttgagaaattgaatgttcagttccttttgtcaactttatgat 5174961  T
Q  305 cagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctattgttatatatta 364  Q
    || | |||||||||||| || |  ||||||| ||||||||| ||  ||||||||||||||    
T  5174962 catcgtgttgtttgtgtgatgtatttatctggagtggtttggaggcattgttatatatta 5175021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 5197409 - 5197629
Alignment:
Q  7 tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||| |||||    
T  5197409 tggacatgataacattttattggagtttcacagcatcttacataacaatactattggccttcataacagtgttgtgcatcaatccacgttggcgcatggc 5197508  T
Q  107 ctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtc 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  ||||||| ||||||||||| |||| |||||||    
T  5197509 ctggttttattacatcagtaagtttatgcgtagattctttccaacttttccattgtattgaagagtggccatagttcctgttgaaacattatgtggagtc 5197608  T
Q  207 tcaaatatttggatattgtaa 227  Q
    ||||||||||| |||||||||    
T  5197609 tcaaatatttgcatattgtaa 5197629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 4840854 - 4840501
Alignment:
Q  7 tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggc 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||    
T  4840854 tggacatgataactttttattggagtttcacagcatcttacataacaatattgttagccttcataacagtgttgtgcatcaatccacgttggcgtatggc 4840755  T
Q  107 ctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||      ||| ||||||||| |||||||    
T  4840754 ctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattaaagagtgtccata------gtttaaactttatgtggagtc 4840661  T
Q  207 tcaaatatttggatattgtaannnnnnnctttagctttga-tttcgaca-gtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgtt 304  Q
    | |||||||||||||||||||       |||||||||| | |||||| | ||| |   ||||||||||  |||||||| |||| ||||||| |||||| |    
T  4840660 taaaatatttggatattgtaatttttatctttagctttaattttcgagatgttgagacttgagacattgaatgttcagttcctattgtcaattttatgat 4840561  T
Q  305 cagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctattgttatatatta 364  Q
    || | | |||||||| | || |  ||||||| ||||||||| ||  ||||||||||||||    
T  4840560 catcgtattgtttgtctgatgtatttatctggagtggtttggaggcattgttatatatta 4840501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 5215554 - 5215774
Alignment:
Q  7 tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||| ||||||||||||||||||||||    
T  5215554 tggacatgataacattttattggagtttcacagcatcttacataacaatactattggccttcataacagtgttgtgcgtcaatccacgttggcgtatggc 5215653  T
Q  107 ctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtc 206  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| | ||  |  | ||||||||||||| |  || ||||    
T  5215654 ctggttttattacatcagtaagtttatgcgtaaaatttttccaacgtttccattgtattgaagagtgtctgttattcctgttgaaacttcaagtgaagtc 5215753  T
Q  207 tcaaatatttggatattgtaa 227  Q
    |||||||||||||||||||||    
T  5215754 tcaaatatttggatattgtaa 5215774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 4855360 - 4855078
Alignment:
Q  7 tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggc 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |||  ||||||||||||||||||| ||||    
T  4855360 tggacatgataacattttattggagtttcacaccatcttacataacaatactactgaccttcataacagtgttg--catcaatccacgttggcgtttggc 4855263  T
Q  107 ctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtc 206  Q
    ||||||||||||||| ||||||||| |  |||  ||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||| |||||||    
T  4855262 ctggttttattacattagtaagtttgtaggtatcttttttccaacttttccattgtattaaagagtgtccgtagtacctgttgaaactttatgtggagtc 4855163  T
Q  207 tcaaatatttggatattgtaannnnnnnctttagctttgatttc-gacagtttaatgttgagacatttgatgttcaggtcctttt 290  Q
    |||||||||||| ||||||||        |||| |||| ||||| |||||||| ||| ||||||||||||| || || |||||||    
T  4855162 tcaaatatttgggtattgtaatttttatatttaactttaatttcagacagtttgatgctgagacatttgattttaagctcctttt 4855078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 5184010 - 5184229
Alignment:
Q  7 tggacatgataacattttattggagtttcacagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatggc 106  Q
    |||||||||||||||||||||||||||||| | ||||||| || |||||| |  ||||||||||||| || ||| |||||||||||||||||||||||||    
T  5184010 tggacatgataacattttattggagtttcataacatcttatattacaatactattggccttcataactgtgttgggcatcaatccacgttggcgtatggc 5184109  T
Q  107 ctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggagtc 206  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| || | |||||||| |||||||||||||||| |||||||    
T  5184110 ctggttttattacatcagtaagtttatgcgtagattctttccatcttttccattatattgatgagtgtccatagttcctgttgaaactttatgtggagtc 5184209  T
Q  207 tcaaatatttggatattgta 226  Q
    | ||||||||||||| ||||    
T  5184210 taaaatatttggatactgta 5184229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 5161727 - 5161949
Alignment:
Q  7 tggacatgataacattttattggag-tttc-acagcatcttacataacaatattgctggccttcataacagttttgtgcatcaatccacgttggcgtatg 104  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||| ||||| |||||| | ||||||||||||    
T  5161727 tggacatgataacattttattggaggtttctacagcatcttacataacaatattgttggccttcgtaacagtgttgtgtatcaatgctcgttggcgtatg 5161826  T
Q  105 gcctggttttattacatcagtaagtttatgcgtagattttttccaacttttccattgtattgaagaatatccatagtacctgttgaaactttatttggag 204  Q
    || |||||||||||||| |||||||||   ||    ||||||||||||||||||||||| |||||| | | | ||||||||||||||||||||  |||||    
T  5161827 gcttggttttattacattagtaagtttgcacgatttttttttccaacttttccattgtactgaagagtgtacgtagtacctgttgaaactttacgtggag 5161926  T
Q  205 tctcaaatatttggatattgtaa 227  Q
    |||||||||||||||||||||||    
T  5161927 tctcaaatatttggatattgtaa 5161949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 5184282 - 5184362
Alignment:
Q  284 tccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctattgttatatatta 364  Q
    |||| |||||||||||||||||| | |||||||||||| || | |||||||| ||   ||||||| |||||| ||||||||    
T  5184282 tcctcttgtcaactttatgttcatcatgttgtttgtgtgatgtacttatctggagaactttgaagatattgtgatatatta 5184362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 364
Target Start/End: Original strand, 36248934 - 36249042
Alignment:
Q  254 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 353  Q
    ||||| ||||||||| | ||||||||||| || ||||||| |  |||||| || |||||||||| ||| || |||||||||  |||||||||||||||||    
T  36248934 agtttgatgttgagataattgatgttcagatcattttgtcca--ttatgtgcatcctgttgtttttgtcatattcttatctagagtggtttgaagctatt 36249031  T
Q  354 gttatatatta 364  Q
    |||||||||||    
T  36249032 gttatatatta 36249042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 364
Target Start/End: Original strand, 19626634 - 19626742
Alignment:
Q  254 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 353  Q
    ||||| ||||||||| | ||||||||||| |  ||||||| |  |||||| || ||||||| || ||| || |||||||||  |||||||||||||||||    
T  19626634 agtttgatgttgagataattgatgttcagtttattttgtcca--ttatgtgcatcctgttggttttgtcatattcttatctagagtggtttgaagctatt 19626731  T
Q  354 gttatatatta 364  Q
    |||||||||||    
T  19626732 gttatatatta 19626742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 364
Target Start/End: Original strand, 19823535 - 19823643
Alignment:
Q  254 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 353  Q
    ||||| ||||||||| | ||||||||||| |  ||||||| |  |||||| || ||||||| || ||| || |||||||||  |||||||||||||||||    
T  19823535 agtttgatgttgagataattgatgttcagtttattttgtcca--ttatgtgcatcctgttggttttgtcatattcttatctagagtggtttgaagctatt 19823632  T
Q  354 gttatatatta 364  Q
    |||||||||||    
T  19823633 gttatatatta 19823643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 361
Target Start/End: Original strand, 4826657 - 4826762
Alignment:
Q  254 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 353  Q
    ||||| ||||||||| | ||||||||||| || ||||||| |  |||||| || |||||||||| ||| || || ||||||| |||||||||||||||||    
T  4826657 agtttgatgttgagataattgatgttcagttcattttgtcca--ttatgtgcatcctgttgtttttgtcatatttttatctggagtggtttgaagctatt 4826754  T
Q  354 gttatata 361  Q
    ||||||||    
T  4826755 gttatata 4826762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 364
Target Start/End: Complemental strand, 16550206 - 16550098
Alignment:
Q  254 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 353  Q
    ||||| ||||||||  | ||||||||||| || ||||||| |  |||||| || |||||||||| ||| || ||||||| || |||||||||||||||||    
T  16550206 agtttgatgttgaggtaattgatgttcagatcattttgtcca--ttatgtgcatcctgttgtttttgtcatattcttatttggagtggtttgaagctatt 16550109  T
Q  354 gttatatatta 364  Q
    |||||||||||    
T  16550108 gttatatatta 16550098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 363
Target Start/End: Complemental strand, 23084160 - 23084053
Alignment:
Q  254 agtttaatgttgagacatttgatgttcaggtccttttgtcaactttatgttcagcctgttgtttgtgtaattttcttatctgaagtggtttgaagctatt 353  Q
    ||||| ||||||||| ||||||||||||| |  |||||||  |||||||| || |||||||||| | | || | |||||||| ||||||||| |||||||    
T  23084160 agtttgatgttgagatatttgatgttcagttaattttgtc--ctttatgtgcatcctgttgtttttttcatatacttatctggagtggtttgcagctatt 23084063  T
Q  354 gttatatatt 363  Q
    ||||||||||    
T  23084062 gttatatatt 23084053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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