View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_33 (Length: 355)
Name: NF1910_high_33
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 3 - 349
Target Start/End: Original strand, 2608893 - 2609239
Alignment:
| Q |
3 |
gaggctaccaattggaccaataggattaagtgatgtttggactggaaagaactctaaggaaatttcgtgccannnnnnngtgatgggattgtgagcataa |
102 |
Q |
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| T |
2608893 |
gaggctaccaattggaccaattggtttaagtgatgtttggaatggaaagaaatctaatgaaatttcgtgccatttttttgtgatgggattgtgagcataa |
2608992 |
T |
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| Q |
103 |
caacatgatttttggtaattgcgaattggtagtgctaagaaccatggtgtagactcatgaggtttgtatttggttatgaaagttccacatgtgtgccaat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2608993 |
caacatgatttttggtaattgcgaattggtagtgctaagaaccatggtgtagactcatgaggtttgtatttggttatggaagttccacatgtgtgccaat |
2609092 |
T |
|
| Q |
203 |
tcttgcaagttgaccttgctcttgctaaggaatctggagagagaaaagagaagatggatgatagaacatcaaagggtaggttgctccacatagaatagaa |
302 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2609093 |
tcttgcaagttgatcttgctcttgctaaggaatctggagagagaaaagagaagatggatgatagaacatcaaagggtaggttgctccacatagaatagaa |
2609192 |
T |
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| Q |
303 |
attgtgaagatttcacactaacaacaaatagaaagatgatgatgatg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2609193 |
attgtgaagatttcacactaacaacaaatagaaagatgatgatgatg |
2609239 |
T |
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