View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1910_high_40 (Length: 317)
Name: NF1910_high_40
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_40 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 47299211 - 47299512
Alignment:
| Q |
1 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47299211 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagaga |
47299310 |
T |
|
| Q |
101 |
cgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47299311 |
cgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaattgtatttggcgaaagaatttgttcgt |
47299410 |
T |
|
| Q |
201 |
attcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagccat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47299411 |
attcaaaatggttgcatgtaatgcgtggagggtctcttgccattagaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagccat |
47299510 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
47299511 |
tt |
47299512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 47292608 - 47292905
Alignment:
| Q |
5 |
gcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47292608 |
gcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcaaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaa |
47292707 |
T |
|
| Q |
105 |
gtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattc |
204 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
47292708 |
gcgcagctatgtcagaagctctaaagaagaaagatcgatgaactagagaagcagtatcttcttccttaatggtatttggcgaaaaaatttgtttgtattc |
47292807 |
T |
|
| Q |
205 |
aaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagccattt |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
47292808 |
aagatggttgcatgtaatgcgtggagggtctcttgccattagaatctccctattccatacaggttgaatggaaggtcgatgtgctcctcgagccattt |
47292905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 47267644 - 47267343
Alignment:
| Q |
1 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
47267644 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaaccaagaga |
47267545 |
T |
|
| Q |
101 |
cgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgt |
200 |
Q |
| |
|
||||| | ||||| |||| |||||||||||||||||||| ||||| | | ||||||| |||||| || ||||||| ||||| ||||||||||| |
|
|
| T |
47267544 |
cgaagcacaacaatgtctgaagtcctaaagaagaaagattgatgaactagggttgtggtatcttcttccttgattgtatttgacgaaaaaatttgttcgt |
47267445 |
T |
|
| Q |
201 |
attcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagccat |
300 |
Q |
| |
|
||||| |||||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
47267444 |
attcatgatggttgcatgtaatgtgtggtgggtctcttgccattagaatctccctattccatacaggttgaatggaaggtttatgtgctcctcgagccat |
47267345 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
47267344 |
tt |
47267343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 47283609 - 47283305
Alignment:
| Q |
1 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagaga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||| || |
|
|
| T |
47283609 |
atctggctctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaagtga |
47283510 |
T |
|
| Q |
101 |
cgaagtgtggctatgtcagaagctctaaagaagaaagattgatggacta---gagaagcagtatctttttccttaatggtatttggcgaaagaatttgtt |
197 |
Q |
| |
|
|| | || ||||||| |||| | |||||||||||||||||||||||| || ||||| ||||| |||||| || |||||| || ||| ||||||| |
|
|
| T |
47283509 |
cggattgcagctatgtgagaaagtgtaaagaagaaagattgatggactatggtagtagcagcatcttcttccttgttgatatttgacgtaagtatttgtt |
47283410 |
T |
|
| Q |
198 |
cgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagc |
297 |
Q |
| |
|
| |||||| ||||||||| |||||||||||||||||||| ||||||| ||||| || ||| || ||||||||||||||| ||| |||||||||||| |
|
|
| T |
47283409 |
catattcacgatggttgcaagtaatgcgtggagggtctctagccattaggatctctctgcgccatactggttgaatggaaggttgatgtgctcctcgagc |
47283310 |
T |
|
| Q |
298 |
cattt |
302 |
Q |
| |
|
||||| |
|
|
| T |
47283309 |
cattt |
47283305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 47242740 - 47242432
Alignment:
| Q |
1 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaat----gtggtgcattgacgaaggtgaaatggaaccaa |
96 |
Q |
| |
|
||||| ||||| |||||||||||||||||| || |||||| || ||| |||||||||||| ||| || ||||| ||| ||||||||| ||||||||| |
|
|
| T |
47242740 |
atctggctctatctgcaatgcttttgtgcggcagcaccaataatatgcagtgataagatcaaattaatgtagtgcaatgatgaaggtgaattggaaccaa |
47242641 |
T |
|
| Q |
97 |
gagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatt |
193 |
Q |
| |
|
| ||||| ||||||| || || | | |||||||||||||||||||||| || |||||||| ||| || ||| |||||||||||||| ||| |
|
|
| T |
47242640 |
gcaacgaatcacagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtatttggcgaaagtatt |
47242541 |
T |
|
| Q |
194 |
tgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctc |
293 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
47242540 |
tgttcgtattcacgatggttgcatgtaatgtatggagggtctcttgccattagaatctccctattccatacaggttgaatggaaggttgatttgctcctc |
47242441 |
T |
|
| Q |
294 |
gagccattt |
302 |
Q |
| |
|
||||||||| |
|
|
| T |
47242440 |
gagccattt |
47242432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 47256857 - 47256560
Alignment:
| Q |
8 |
tctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagagacgaagtg |
107 |
Q |
| |
|
|||| |||||||||||||||||| || |||||| |||||| ||||||||||||| ||| ||||| || |||||||| |||||||||| |||||| | |
|
|
| T |
47256857 |
tctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcaccgagaaaggtgaagtggaaccaagcgacgaatcg |
47256758 |
T |
|
| Q |
108 |
tggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatttgttcgtattc |
204 |
Q |
| |
|
||||||| || | | | |||||||||||||||||||||| | || |||||||| |||||| ||| |||||||||| ||| |||||||| ||||| |
|
|
| T |
47256757 |
cagctatgtgagcggatgtgaagaagaaagattgatggactacaatagtagtatcttcttccttgatgtacgtatttggcggaagtatttgttcatattc |
47256658 |
T |
|
| Q |
205 |
aaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagccattt |
302 |
Q |
| |
|
| ||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
47256657 |
acgatggttgcaagtaatgtatggagggtctcttgccattagaatctccctattccatacaggttgaatggaaggttgatttgctcctcgagctattt |
47256560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 47279016 - 47278712
Alignment:
| Q |
1 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagaga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||| || |
|
|
| T |
47279016 |
atctggctctaactgcaatgcttttgtacggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatggaatcaaacga |
47278917 |
T |
|
| Q |
101 |
cgaagtgtggctatgtcag-aagctctaaagaagaaagattgatggacta---gagaagcagtatctttttccttaatggtatttggcgaaagaatttgt |
196 |
Q |
| |
|
|||| |||||| || |||| ||||||||||||| |||||||||| || |||| ||||| |||||| || |||||| |||||| |||||| |
|
|
| T |
47278916 |
cgaatctcagctatgcgagtaagc-gtaaagaagaaagagtgatggactatggtagcagcaacatcttcttccttgttgatatttgacgaaagtatttgt |
47278818 |
T |
|
| Q |
197 |
tcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgag |
296 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||||||| ||||| || ||| || ||||||||||||||| ||| ||||||||||| |
|
|
| T |
47278817 |
tcgtattcatgatggttgcaagtaacacgtggagggtctcttgccattaggatctctctgcgccataccggttgaatggaaggttgatgtgctcctcgag |
47278718 |
T |
|
| Q |
297 |
ccattt |
302 |
Q |
| |
|
|||||| |
|
|
| T |
47278717 |
ccattt |
47278712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 32731407 - 32731103
Alignment:
| Q |
1 |
atctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaagaga |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||| || |||||| |||||| | |||||||||| ||||| ||||| ||| ||||||||| |||||||||| | |
|
|
| T |
32731407 |
atctggctctatctgcaatgcttttgtgcggcagcaccaataacatgcactgataagatcaaatgtagtgcaatgatgaaggtgaattggaaccaagcaa |
32731308 |
T |
|
| Q |
101 |
cgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagtatctttttccttaatg---gtatttggcgaaagaatttgtt |
197 |
Q |
| |
|
|||| | ||||||| || || | | |||||||||||||||||||||| || |||||||| ||| || ||| |||||||||||||| ||||||| |
|
|
| T |
32731307 |
cgaatcgcagctatgtgagcaggtgtgaagaagaaagattgatggactacgatagtagtatcttcttctttgatgtaggtatttggcgaaagtatttgtt |
32731208 |
T |
|
| Q |
198 |
cgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatctccctattccacacaggttgaatggaaggtcgatatgctcctcgagc |
297 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
32731207 |
cgtattcacgatggttgcatgtaatacatggagggtctcttgccattagaatctccctattccatacaggttgaatggaaggttgatttgctcctcgagc |
32731108 |
T |
|
| Q |
298 |
cattt |
302 |
Q |
| |
|
||||| |
|
|
| T |
32731107 |
cattt |
32731103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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