View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_57 (Length: 260)
Name: NF1910_high_57
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 32221588 - 32221826
Alignment:
| Q |
1 |
cgtaacaaactgtttaaagcagctgatcggagtaagataaaaaattagttgtcaagtatcggaaatttcgtactgcgcgtgtgcgacccttgaatgttgc |
100 |
Q |
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| T |
32221588 |
cgtaacaaactgtttaaagcagctgatcggagtaagataaaaaattagttgtcaagtttcggaaatttcgtactg------tgagacccttgaatgttgc |
32221681 |
T |
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| Q |
101 |
aaatgataatgatgcaaaaggttctaaattttaaggttgagcatgagcttaccagttaaggatattgtgcttgctttagttaaccaacctcctgttcgag |
200 |
Q |
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| T |
32221682 |
aaatgataatgatgcaaaaggttctaaattttaaggttgagcatgagcttaccagttaaggatattgtgcttgctttagttaaccaacctcctgttcgaa |
32221781 |
T |
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| Q |
201 |
aacatggaataagttttatttggtaaattaaagcacatgtatatt |
245 |
Q |
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| T |
32221782 |
cacatggaataagttttatttggtaaattaaagcacatgtatatt |
32221826 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 12966423 - 12966489
Alignment:
| Q |
82 |
tgcgacccttgaatgttgcaaatgataatgatgcaaaaggttctaaattttaaggttgagcatgagct |
149 |
Q |
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| T |
12966423 |
tgcgacccttgaatgttgcaaatgtaaatgatgc-aaaggttctaaattttaaggttgcgcatgagct |
12966489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 10388936 - 10389023
Alignment:
| Q |
120 |
ggttctaaatttt-aaggttgagcatgagcttaccagttaa-ggatattgtgcttgctttagttaaccaacctcctgttcgagaacat |
205 |
Q |
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| T |
10388936 |
ggttctaaatttttaaggttgagcatgagtgtaccacataaaggatcttgtgcttgcttcacttaaccaacgtactgttcgagcacat |
10389023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 11981910 - 11981996
Alignment:
| Q |
158 |
aaggatattgtgcttgctttagttaaccaacctcctgttcgagaacatggaataagttttatttggtaaattaaagcacatgtatat |
244 |
Q |
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| T |
11981910 |
aaggatcttgtgcttgcttcaataagccaacctcgtgttcgagcacttggtctaagttttctttggtaaatttgagcacacgtatat |
11981996 |
T |
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