View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_high_6 (Length: 614)

Name: NF1910_high_6
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_high_6
NF1910_high_6
[»] chr3 (11 HSPs)
chr3 (14-287)||(34627572-34627845)
chr3 (397-614)||(34628142-34628349)
chr3 (217-286)||(54007570-54007639)
chr3 (212-269)||(11075265-11075322)
chr3 (217-286)||(42997393-42997462)
chr3 (212-277)||(51305455-51305520)
chr3 (203-277)||(6178305-6178379)
chr3 (215-277)||(52564541-52564603)
chr3 (209-278)||(23600709-23600778)
chr3 (212-277)||(50559101-50559166)
chr3 (217-277)||(12762583-12762643)
[»] chr8 (3 HSPs)
chr8 (219-286)||(40517366-40517433)
chr8 (215-273)||(24795370-24795428)
chr8 (215-276)||(6182346-6182407)
[»] chr4 (8 HSPs)
chr4 (217-277)||(18767977-18768037)
chr4 (212-286)||(34616669-34616743)
chr4 (217-277)||(14603574-14603634)
chr4 (219-277)||(24990232-24990290)
chr4 (212-278)||(39654940-39655006)
chr4 (253-286)||(40590707-40590740)
chr4 (217-277)||(1140727-1140787)
chr4 (217-277)||(27371258-27371318)
[»] chr7 (5 HSPs)
chr7 (219-286)||(37845259-37845326)
chr7 (217-275)||(20337430-20337488)
chr7 (212-263)||(39110994-39111045)
chr7 (210-291)||(38944900-38944981)
chr7 (217-277)||(3343224-3343283)
[»] scaffold0087 (1 HSPs)
scaffold0087 (212-286)||(53250-53324)
[»] chr5 (2 HSPs)
chr5 (212-286)||(21943585-21943658)
chr5 (212-288)||(33655302-33655378)
[»] chr2 (7 HSPs)
chr2 (215-277)||(43520975-43521037)
chr2 (212-277)||(1907652-1907717)
chr2 (217-277)||(20532356-20532416)
chr2 (212-277)||(5054061-5054126)
chr2 (217-278)||(8427669-8427730)
chr2 (217-277)||(14498900-14498960)
chr2 (217-277)||(36625205-36625265)
[»] chr1 (10 HSPs)
chr1 (217-279)||(29706597-29706659)
chr1 (212-277)||(19947633-19947698)
chr1 (215-277)||(51436662-51436724)
chr1 (217-278)||(31975107-31975167)
chr1 (216-277)||(43769736-43769797)
chr1 (217-277)||(21433294-21433354)
chr1 (243-271)||(27470134-27470162)
chr1 (217-273)||(31433611-31433667)
chr1 (209-241)||(36954800-36954832)
chr1 (217-277)||(43367795-43367855)
[»] scaffold0005 (1 HSPs)
scaffold0005 (217-277)||(213744-213804)
[»] chr6 (2 HSPs)
chr6 (220-267)||(34084526-34084573)
chr6 (217-286)||(30956180-30956249)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 34627572 - 34627845
Alignment:
Q  14 cctgtggaatgtaaaagcaatcaagtgggatttacgccaaatccgggtgatgcttgaatggattggtttttaagagatccctgtttccctttctataaaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34627572 cctgtggaatgtaaaagcaatcaagtgggatttacgccaaatccgg-tgatgcttgaatggattggtttttaagagatccttgtttccctttctataaaa 34627670  T
Q  114 agaaattagaaaatgtaatccatcaacaaaaagtgaatag-nnnnnnnnnnncaatgtaaagcagtgtaagagtttaaacgtaccatgatttatagaaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||| |||||||||||||||||    
T  34627671 agaaattagaaaatgtaatccatcaacaaaaagtgaatagaaaaaaaaaaaacaatgtaaagcagtgtaagagtttaaacgtgccatgatttatagaaaa 34627770  T
Q  213 gttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatattt 287  Q
    ||| |||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  34627771 gttgtgttatttgaacaattatttttatgataacttataagacaaccataaatttacaaagaaaataagatattt 34627845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 397 - 614
Target Start/End: Original strand, 34628142 - 34628349
Alignment:
Q  397 ttatagaaatgcacttattatctaggacatgannnnnnnnn-ggacgaaagctatttcaaccaaactaaggataactgattcattctcaagtatatagtt 495  Q
    ||||||||||||||||||||| ||||||||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34628142 ttatagaaatgcacttattatttaggacatgattttttttttggaagaaagctatttcaaccaaactaaggataactgattcattctcaagtatatagtt 34628241  T
Q  496 cgaggatatttaagatcaaaaacagagtcaaagctcggcagaactggacatatgtgagtctttgaaggtctcggtctaagttaaagttgtggaattgaac 595  Q
    | ||||| ||||||||||||||          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34628242 caaggatctttaagatcaaaaa----------gctcggcagaactggacatatgtgagtctt-gaaggtctcggtctaagttaaagttgtggaattgaac 34628330  T
Q  596 aatgaagcatcaaacacac 614  Q
    |||||||||||||||||||    
T  34628331 aatgaagcatcaaacacac 34628349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 54007639 - 54007570
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    |||||||||||| |  || | |||| |||||||||||||||||||||||||||||||||||  |||||||    
T  54007639 tgttatttgaacgaccatctgtatgacaacttataagacaaccataaatttataaagaaaaatagatatt 54007570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 11075265 - 11075322
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttat 269  Q
    |||||||||||||||||||  |||| |||| |||||| | ||||||||||||||||||    
T  11075265 agttatgttatttgaacaaccatttgtatgacaacttttgagacaaccataaatttat 11075322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 42997462 - 42997393
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    |||||||| |||| | |||| |||| |||||| ||||||||||| || | ||||||||||||||||||||    
T  42997462 tgttatttaaacattcatttatatgacaacttttaagacaaccaaaattgtataaagaaaataagatatt 42997393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 51305455 - 51305520
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||| |||||||||||| ||||||||| |||||| | | ||| ||||||||||| ||||||||    
T  51305455 agttatgatatttgaacaatcatttttatgacaactttttatacatccataaatttacaaagaaaa 51305520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 6178305 - 6178379
Alignment:
Q  203 ttatagaaaagttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||| || |||| ||||||||||||||  ||||||||| ||||||   | |||||||||||||| |||||||||    
T  6178305 ttataaaagagttgtgttatttgaacaaccatttttatgacaactttcgatacaaccataaatttgtaaagaaaa 6178379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 52564541 - 52564603
Alignment:
Q  215 tatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||||  |||| |||| ||||||||  |||||||||| ||||| ||||||||    
T  52564541 tatgttatttgaacaaccatttctatgacaacttatgggacaaccatagatttacaaagaaaa 52564603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 23600778 - 23600709
Alignment:
Q  209 aaaagttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaat 278  Q
    ||||||| |||||||||||||   |||| |||| |||||| | ||||||||| || ||||||||||||||    
T  23600778 aaaagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaaaat 23600709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 50559101 - 50559166
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||| |||||||||||||| ||||| | ||  || || || |||||||||||||||||||||||||    
T  50559101 agttgtgttatttgaacaactatttatgtgataatttttatgacaaccataaatttataaagaaaa 50559166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 12762583 - 12762643
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||| ||||  ||| ||| ||||  |||||||||||||||| ||||||||    
T  12762583 tgttatttgaacaatcatttacatgacaatttatgggacaaccataaatttacaaagaaaa 12762643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 40517433 - 40517366
Alignment:
Q  219 ttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||||  |||||||    
T  40517433 ttatttgaacaatcatttttatgacatcttataagacaaccataaatttacaaagaaaagtagatatt 40517366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 24795428 - 24795370
Alignment:
Q  215 tatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaag 273  Q
    |||||||||||||||| ||||| | || |||||||| ||||||||||||||||||||||    
T  24795428 tatgttatttgaacaactatttgtttgacaacttatgagacaaccataaatttataaag 24795370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 6182407 - 6182346
Alignment:
Q  215 tatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaa 276  Q
    |||||||||||||||| ||||| |||| ||| ||||  |||||| |||||||||||||||||    
T  6182407 tatgttatttgaacaactatttgtatgacaatttattggacaacaataaatttataaagaaa 6182346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 18768037 - 18767977
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||||||| ||||||||||| | ||  ||||| ||||||||||||||||||||||||||||    
T  18768037 tgttatttaaacaattatttgtgtgataacttttaagacaaccataaatttataaagaaaa 18767977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 34616743 - 34616669
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    |||| |||||||||||||  ||||| |||| |||||| | ||||||||| || |||||||||||||| |||||||    
T  34616743 agttgtgttatttgaacatctatttatatgacaacttttgagacaaccaaaattttataaagaaaatgagatatt 34616669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 14603634 - 14603574
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||| ||||  ||| ||| || | ||||||||||||||||||||||||||    
T  14603634 tgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttataaagaaaa 14603574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 24990290 - 24990232
Alignment:
Q  219 ttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||| ||| |||| |||| ||||||||  |||||||||||||||| ||||||||    
T  24990290 ttatttgaataatcatttgtatgacaacttatgggacaaccataaatttacaaagaaaa 24990232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 39655006 - 39654940
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaat 278  Q
    |||| |||||||||||||| |||||  |||  || || ||||||||||||||||||| |||||||||    
T  39655006 agttgtgttatttgaacaactatttagatgataatttttaagacaaccataaatttacaaagaaaat 39654940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Complemental strand, 40590740 - 40590707
Alignment:
Q  253 gacaaccataaatttataaagaaaataagatatt 286  Q
    |||||||||||||||||||||||||| |||||||    
T  40590740 gacaaccataaatttataaagaaaattagatatt 40590707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 1140787 - 1140727
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||||||||||||||||||||  |  ||||||||  |||||||||| ||||| ||||||||    
T  1140787 tgttatttgaacaattattttattcgcaacttatgtgacaaccatagatttacaaagaaaa 1140727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 27371318 - 27371258
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||  |||| | ||  ||||||| ||||||||||||||||| ||||||||    
T  27371318 tgttatttgaacaacaatttatttgagaacttatgagacaaccataaatttacaaagaaaa 27371258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 37845326 - 37845259
Alignment:
Q  219 ttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    |||||| ||||||||||| ||||  ||||||||| |||| |||||||||||||||||||  |||||||    
T  37845326 ttatttaaacaattatttgtatgataacttataaaacaatcataaatttataaagaaaagtagatatt 37845259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 20337488 - 20337430
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaa 275  Q
    |||||||||||||| ||||| |||| |||||||| ||| ||||||||||||| ||||||    
T  20337488 tgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 20337430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 39111045 - 39110994
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataa 263  Q
    |||| ||||||||||||||||||||| ||| |||||||| |||||| |||||    
T  39111045 agttgtgttatttgaacaattattttaatgacaacttatgagacaatcataa 39110994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 38944981 - 38944900
Alignment:
Q  210 aaagttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatttgtac 291  Q
    |||||| |||||||| |||| | |||| |||| |||||| |||||||| || || |||| ||||||||||| ||||| ||||    
T  38944981 aaagttgtgttatttaaacattcatttatatgacaacttttaagacaatcaaaattttacaaagaaaataaaatattagtac 38944900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 3343224 - 3343283
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||||||||||||| |||||   || |||||| |||||||||||| |||||||||||||||    
T  3343224 tgttatttgaacaactatttgattgacaacttttaagacaaccat-aatttataaagaaaa 3343283  T

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Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 53250 - 53324
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    |||| ||||||||||||| |||||| ||||  || || | ||||||||| ||||||||||||||||| |||||||    
T  53250 agttgtgttatttgaacatttatttatatgataagtttttagacaaccaaaaatttataaagaaaatgagatatt 53324  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 286
Target Start/End: Original strand, 21943585 - 21943658
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    |||| |||||||| ||||| |||||| ||| ||||||| | ||||||||| |||||| |||||||||||||||||    
T  21943585 agttgtgttatttaaacaactattttaatgacaacttacatgacaaccat-aatttacaaagaaaataagatatt 21943658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 33655302 - 33655378
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatttg 288  Q
    |||| ||||||||||| || ||||||||||  ||||| |   ||||||||||||||||||||||||| || ||||||    
T  33655302 agttgtgttatttgaataactatttttatgataacttttggtacaaccataaatttataaagaaaatgaggtatttg 33655378  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 43521037 - 43520975
Alignment:
Q  215 tatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||||| ||||  ||| |||| |||||||||||||| |||||| ||||||||    
T  43521037 tatgttatttgaacaatcatttacatgacaacctataagacaaccatcaatttacaaagaaaa 43520975  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 1907652 - 1907717
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||| ||||||||||||||| ||||  ||| |||||| || |||||||||||||||| ||||||||    
T  1907652 agttgtgttatttgaacaatcatttagatgacaacttgtatgacaaccataaatttacaaagaaaa 1907717  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 20532356 - 20532416
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||||||||||||| ||||| ||||  |||||||  || ||||||||||||||||||||||    
T  20532356 tgttatttgaacaactatttgtatgataacttatgggataaccataaatttataaagaaaa 20532416  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 5054061 - 5054126
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||| |||||||| || || ||||| |||| |||||| | ||||||||||||||||||||| ||||    
T  5054061 agttgtgttatttaaaaaactatttatatgacaacttttgagacaaccataaatttataaaaaaaa 5054126  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 8427730 - 8427669
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaat 278  Q
    |||||||||||||||||||||  || |||||| |   |||||||||||||||||||| ||||    
T  8427730 tgttatttgaacaattattttggtggcaacttttggaacaaccataaatttataaaggaaat 8427669  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 14498900 - 14498960
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||| |||| ||||  || |||| ||||||| ||||||||||||| ||||    
T  14498900 tgttatttgaacaatcatttatatgataatttatgagacaactataaatttataaaaaaaa 14498960  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 36625265 - 36625205
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||| |||||||| |||| |||  | ||||||||||||||||||| | ||||||    
T  36625265 tgttatttgaataattatttgtatgacaatatttaagacaaccataaatttacagagaaaa 36625205  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 29706597 - 29706659
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaata 279  Q
    ||||||||||||||| |||| | || |||||| ||||| ||||||||||||| ||||||||||    
T  29706597 tgttatttgaacaatcatttctgtgacaacttttaagataaccataaatttacaaagaaaata 29706659  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 19947633 - 19947698
Alignment:
Q  212 agttatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||| ||||||||||||| |||||| |||| |||||| | ||||||||| || |||||||||||||    
T  19947633 agttgtgttatttgaacatttatttatatgacaacttttgagacaaccaaaattttataaagaaaa 19947698  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 51436662 - 51436724
Alignment:
Q  215 tatgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||||| ||||   || ||||||||| |||||||||| ||||| ||||||||    
T  51436662 tatgttatttgaacaataatttggttgacaacttatatgacaaccatagatttacaaagaaaa 51436724  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 31975167 - 31975107
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaat 278  Q
    |||||||||||||| |||||| |||  ||||||||||||||| ||| ||||| |||||||||    
T  31975167 tgttatttgaacaactatttt-atgataacttataagacaactatagatttacaaagaaaat 31975107  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 43769797 - 43769736
Alignment:
Q  216 atgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    |||||||||||| ||| ||||   || |||||||| |||||||||| |||||||||||||||    
T  43769797 atgttatttgaataatcatttggttgacaacttatgagacaaccattaatttataaagaaaa 43769736  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 21433294 - 21433354
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||| |||| | || ||||||  | ||||||||||||||| |||||||||    
T  21433294 tgttatttgaacaatcatttgtgtgacaactttcaggacaaccataaatttgtaaagaaaa 21433354  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 27470162 - 27470134
Alignment:
Q  243 caacttataagacaaccataaatttataa 271  Q
    |||||||||||||||||||||||||||||    
T  27470162 caacttataagacaaccataaatttataa 27470134  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 31433667 - 31433611
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaag 273  Q
    |||||||||||||| ||||| ||||  ||||||| ||||||||||| ||||| ||||    
T  31433667 tgttatttgaacaactatttgtatgataacttatgagacaaccatagatttacaaag 31433611  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 36954832 - 36954800
Alignment:
Q  209 aaaagttatgttatttgaacaattatttttatg 241  Q
    ||||||||||||||||||||||| |||||||||    
T  36954832 aaaagttatgttatttgaacaatcatttttatg 36954800  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 43367795 - 43367855
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||| |||| | || |||||| ||  ||||||||||||||| ||||||||    
T  43367795 tgttatttgaacaatcatttgtgtgacaacttttagaacaaccataaatttacaaagaaaa 43367855  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 213744 - 213804
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaa 277  Q
    ||||||||||||||| ||||  ||| ||| || | ||||||||||||||||||||||||||    
T  213744 tgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttataaagaaaa 213804  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 34084526 - 34084573
Alignment:
Q  220 tatttgaacaattatttttatgtcaacttataagacaaccataaattt 267  Q
    ||||||||||| ||||| |||| |||||||| ||||||||||||||||    
T  34084526 tatttgaacaactatttgtatgacaacttatgagacaaccataaattt 34084573  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 30956249 - 30956180
Alignment:
Q  217 tgttatttgaacaattatttttatgtcaacttataagacaaccataaatttataaagaaaataagatatt 286  Q
    ||||||||||||||  |||| ||||  |||||||  |||||||||| ||||| ||||||||| |||||||    
T  30956249 tgttatttgaacaaccatttatatgaaaacttatgggacaaccatagatttacaaagaaaattagatatt 30956180  T

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