View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_high_68 (Length: 243)

Name: NF1910_high_68
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_high_68
NF1910_high_68
[»] chr3 (2 HSPs)
chr3 (9-243)||(39712585-39712819)
chr3 (10-243)||(11528196-11528426)
[»] chr2 (5 HSPs)
chr2 (60-243)||(44905346-44905529)
chr2 (60-241)||(28166503-28166684)
chr2 (87-212)||(37952509-37952634)
chr2 (58-207)||(37896817-37896966)
chr2 (58-207)||(37958224-37958373)
[»] chr1 (2 HSPs)
chr1 (60-218)||(40768477-40768635)
chr1 (60-243)||(13228303-13228486)
[»] chr7 (1 HSPs)
chr7 (60-243)||(38757482-38757665)
[»] chr4 (2 HSPs)
chr4 (60-219)||(11149048-11149207)
chr4 (60-243)||(34538964-34539147)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 39712819 - 39712585
Alignment:
Q  9 ataatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattgttggctttgcaagt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39712819 ataatcaccttgctccaatattaacacacaaaactagggttgaagatattaatgacattgaaaatgacacattcactcttccattgttggctttgcaagt 39712720  T
Q  109 ctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39712719 ctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatc 39712620  T
Q  209 catcaaggaggtgaagcagctgaattgaagtcact 243  Q
    |||||||||||||| ||||||||||||||||||||    
T  39712619 catcaaggaggtgatgcagctgaattgaagtcact 39712585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 11528426 - 11528196
Alignment:
Q  10 taatcaccttgctccaatattaacacacaaaactagggttgaagatattaataacattgaaaatgacacattcactcttccattgttggctttgcaagtc 109  Q
    ||||||||||| ||||| ||||||| ||||||  | | |||| ||||   |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11528426 taatcaccttgttccaacattaacaaacaaaaacaagtttgatgata---ataacattgaaaatgacacattcattcttccattgttggctttgcaagtc 11528330  T
Q  110 tcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatcc 209  Q
     ||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||||| ||  |||||| ||||||||||||||||||||||||||||||    
T  11528329 acagtttttcccgaccatggtctttgcattggcatcacatattgtcacgtgatggatgatagaagttgcgatcatttcatgaaatcttggtcttttatcc 11528230  T
Q  210 atcaaggaggtgaagcagctgaattgaagtcact 243  Q
    ||||| ||||||| | || ||||||||| |||||    
T  11528229 atcaaagaggtgatgtagttgaattgaaatcact 11528196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 44905529 - 44905346
Alignment:
Q  60 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 159  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  44905529 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgt 44905430  T
Q  160 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcact 243  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || |||||||||||||||    
T  44905429 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcact 44905346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 28166684 - 28166503
Alignment:
Q  60 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 159  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| ||||||||||||||    
T  28166684 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacgt 28166585  T
Q  160 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtca 241  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || |||||||||||||    
T  28166584 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtca 28166503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 37952509 - 37952634
Alignment:
Q  87 ttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgtgatggatggtaacagttgcaatcattt 186  Q
    |||| |||||| ||||||||||| | ||||| |||||||||||| ||||||||| ||| | ||||||||| |||||||||| |||| |||||||||||||    
T  37952509 ttccgttgttgtctttgcaagtcacggttttccccaaccatggtctttgcattgccatcaaatattgccatgtgatggatgataactgttgcaatcattt 37952608  T
Q  187 catgaaatcttggtcttttatccatc 212  Q
     |||||||||||||||||||||||||    
T  37952609 aatgaaatcttggtcttttatccatc 37952634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 37896966 - 37896817
Alignment:
Q  58 taataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccac 157  Q
    |||| ||||||||||| ||||||||| | | || ||||||||||||||||  || ||||| || ||||||||| |||||||||  || |||||||| ||     
T  37896966 taatgacattgaaaataacacattcattttccctttgttggctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcat 37896867  T
Q  158 gtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttat 207  Q
    || ||||||| ||   |||| | |||||||||||||||||||||||||||    
T  37896866 gtaatggatgatagttgttgtagtcatttcatgaaatcttggtcttttat 37896817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 207
Target Start/End: Original strand, 37958224 - 37958373
Alignment:
Q  58 taataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccac 157  Q
    |||| ||||||| ||| ||||||||| | | || |||||| |||||||||  || ||||| || ||||||||| |||||||||  || |||||||| ||     
T  37958224 taatgacattgagaataacacattcattttccctttgttgtctttgcaagcttctgttttccctaaccatggtctttgcattgcaatcacatattgtcat 37958323  T
Q  158 gtgatggatggtaacagttgcaatcatttcatgaaatcttggtcttttat 207  Q
    || ||||||| ||   |||| | |||||||||||| ||||||||||||||    
T  37958324 gtaatggatgatagttgttgtagtcatttcatgaagtcttggtcttttat 37958373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 40768635 - 40768477
Alignment:
Q  60 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 159  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||    
T  40768635 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctaaccatggtatttgcattggcatcacatattgccacgt 40768536  T
Q  160 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggag 218  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  40768535 gatggatgataatagttgcaatcattttatgaaatcttggtcttttatccatcaaggag 40768477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 13228303 - 13228486
Alignment:
Q  60 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 159  Q
    |||||||||||||||||||| |||  ||||||||||| |||||||||||| |||||||||   |||||||| ||||||||||||| ||||||||||||||    
T  13228303 ataacattgaaaatgacacaatcatccttccattgttagctttgcaagtcacagtttttcttgaccatggtatttgcattggcatcacatattgccacgt 13228402  T
Q  160 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcact 243  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||  | | || |||||||||||||||    
T  13228403 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccataaaggaggaaatgtagttgaattgaagtcact 13228486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 38757665 - 38757482
Alignment:
Q  60 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 159  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| ||| |    
T  38757665 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgacacat 38757566  T
Q  160 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcact 243  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  | | || |||||||||||||||    
T  38757565 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggaaatgtagttgaattgaagtcact 38757482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 11149048 - 11149207
Alignment:
Q  60 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 159  Q
    ||||||||||||||||||||||||  ||||| ||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||||||| |    
T  11149048 ataacattgaaaatgacacattcatccttccgttgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgccacat 11149147  T
Q  160 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggagg 219  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11149148 gatggatgataatagttgcaatcatttcatgaaatcttggtcttttatccatcaaggagg 11149207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 60 - 243
Target Start/End: Complemental strand, 34539147 - 34538964
Alignment:
Q  60 ataacattgaaaatgacacattcactcttccattgttggctttgcaagtctcagtttttcccaaccatggtgtttgcattggcattacatattgccacgt 159  Q
    ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||| |||||||| | |||    
T  34539147 ataacattgaaaatgacacattcatccttccattgttagctttgcaagtcacagtttttcctgaccatggtatttgcattggcatcacatattgtcccgt 34539048  T
Q  160 gatggatggtaacagttgcaatcatttcatgaaatcttggtcttttatccatcaaggaggtgaagcagctgaattgaagtcact 243  Q
    |||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||  | | || |||||||||||||||    
T  34539047 gatggatgataatagttgcaatcatttcatgaaatattgatcttttatccatcaaggaggaaatgtagttgaattgaagtcact 34538964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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