View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_72 (Length: 238)
Name: NF1910_high_72
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 42836773 - 42836562
Alignment:
| Q |
13 |
ttgttgttcctaatttgtaatcattatcgcaataagaaaagtggacaaacggggtggtccatctacccgtctaaatgctagtaaaataaaaaatatataa |
112 |
Q |
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| T |
42836773 |
ttgttgttcctaatttataatcattatcgcaataagaaaagtggacaaacggggtggtccatctacccgtctaaatgctagtaaaataaaaaatatataa |
42836674 |
T |
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| Q |
113 |
aggctgacttgtcaataataataggataaggccttt---nnnnnnnnntgtggatgttcgtcgttgtaccacctccttacacaaagctttttgttgggat |
209 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42836673 |
aggctgacttgtcaataataataggataagacctttcaaaaaaaaaaacgtggatgttcgttgttgtaccacctccttacacaaagctttttgttgggat |
42836574 |
T |
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| Q |
210 |
cgtagttacacg |
221 |
Q |
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|||||||||||| |
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| T |
42836573 |
cgtagttacacg |
42836562 |
T |
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