View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_high_73 (Length: 238)

Name: NF1910_high_73
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_high_73
NF1910_high_73
[»] chr6 (13 HSPs)
chr6 (1-222)||(7131821-7132042)
chr6 (1-205)||(7119343-7119547)
chr6 (8-218)||(10579433-10579642)
chr6 (33-218)||(6596624-6596809)
chr6 (16-209)||(6395065-6395258)
chr6 (33-214)||(19632654-19632835)
chr6 (15-214)||(6426711-6426910)
chr6 (131-222)||(6602879-6602970)
chr6 (1-120)||(6589117-6589236)
chr6 (129-216)||(14821022-14821109)
chr6 (127-222)||(6410336-6410431)
chr6 (164-218)||(7993860-7993914)
chr6 (177-214)||(6423597-6423634)
[»] chr5 (2 HSPs)
chr5 (134-222)||(20477756-20477844)
chr5 (127-196)||(32267805-32267874)
[»] chr1 (5 HSPs)
chr1 (140-214)||(33160850-33160924)
chr1 (140-214)||(29658635-29658709)
chr1 (140-214)||(29691150-29691224)
chr1 (140-214)||(29718662-29718736)
chr1 (164-216)||(19468185-19468237)
[»] chr8 (1 HSPs)
chr8 (127-218)||(17627734-17627825)
[»] chr3 (2 HSPs)
chr3 (5-126)||(13470520-13470641)
chr3 (5-126)||(51764228-51764349)
[»] chr4 (4 HSPs)
chr4 (146-202)||(10634128-10634184)
chr4 (16-118)||(21834174-21834276)
chr4 (127-220)||(547246-547339)
chr4 (153-222)||(3438323-3438392)
[»] chr7 (2 HSPs)
chr7 (164-216)||(10169816-10169868)
chr7 (164-216)||(10177341-10177393)


Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7131821 - 7132042
Alignment:
Q  1 tgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7131821 tgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaata 7131920  T
Q  101 gagagactttaactgaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7131921 gagagactttaactgaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttcta 7132020  T
Q  201 acgagtgaatacaaggctaatt 222  Q
    ||||||||||||||||||||||    
T  7132021 acgagtgaatacaaggctaatt 7132042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 7119343 - 7119547
Alignment:
Q  1 tgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7119343 tgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaata 7119442  T
Q  101 gagagactttaactgaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7119443 gagagactttaactgaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttcta 7119542  T
Q  201 acgag 205  Q
    |||||    
T  7119543 acgag 7119547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 10579642 - 10579433
Alignment:
Q  8 gcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagagagac 107  Q
    |||||||||||||||||| || || ||||||||||||||||||||||| |||| |||  ||||||||  ||||  | |||||||||| |||||||||||     
T  10579642 gcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacaatgaatttctacccaaatagagagat 10579543  T
Q  108 tttaactgaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtg 207  Q
    ||||| ||||| ||||||| ||||||| ||||||||| | |||  |||||||||| ||||||||||| ||||||||| ||||| || ||||| ||||| |    
T  10579542 tttaattgagg-tatacaccagaattctctacactctttgtccaaatagctgtgttttccattttgatctcactaagcgaaggacaatttcttacgaggg 10579444  T
Q  208 aatacaaggct 218  Q
    || ||||||||    
T  10579443 aaaacaaggct 10579433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 6596809 - 6596624
Alignment:
Q  33 aaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagagagactttaactgaggatatacactagaat 132  Q
    ||||| || ||||||||||||||| ||| ||| ||||||| | ||||||   |||||||||| ||||||||||||||||| ||||| ||||||  |||||    
T  6596809 aaattaggaaaaaaggaagctaatcttataatattttcattacttaaccaaaaatttctacccaaatagagagactttaattgagggtatacatcagaat 6596710  T
Q  133 tccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggct 218  Q
    || ||||||||||  |||| |||||||||| || |||||||| ||||||||| ||||| || ||||| ||||| ||| ||| ||||    
T  6596709 tctctacactctccgtcccaatagctgtgttttgcattttgatctcactaagcgaaggacaatttcttacgagggaaaacacggct 6596624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 6395065 - 6395258
Alignment:
Q  16 tcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagagagactttaactg 115  Q
    |||||||||| || |||||||||||||||| |||||  || ||||  ||| |||||||  ||||||  |||||| |||| ||||||||||| ||||||||    
T  6395065 tcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatgattatttcatctattaaccagtaatttgtacccaaatagagagagtttaactg 6395164  T
Q  116 aggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaa 209  Q
    ||| ||||||| ||||| ||| ||| |||||||||| |||  ||||| ||||||||| | |||  ||||  |||| ||||||||||||||||||    
T  6395165 agggtatacaccagaatgcccaacagtctctttcccaatacatgtgttttccattttaatctcggtaagcaaaggacagtttctaacgagtgaa 6395258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 33 - 214
Target Start/End: Original strand, 19632654 - 19632835
Alignment:
Q  33 aaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagagagactttaactgaggatatacactagaat 132  Q
    |||||||| ||||| ||||| || |||  ||| ||||||||| |||||||| |||||| ||| ||||||||||||||||| ||||| ||||||| |  ||    
T  19632654 aaattgggaaaaaacgaagcgaacattgtaatcttttcatcacttaaccgtaaatttcgacccaaatagagagactttaattgagggtatacaccaatat 19632753  T
Q  133 tccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaa 214  Q
    || ||||||| ||||| |  |||| || || ||||||||||| ||||||||||||||| || || |||||||| ||| ||||    
T  19632754 tctctacactttcttttcaaatagatgcgttttccattttgatctcactaagtgaaggacaattactaacgagcgaaaacaa 19632835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 6426711 - 6426910
Alignment:
Q  15 ttcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagagagactttaact 114  Q
    ||||||||||| || |||||||||||||||| ||||||  | ||||  ||  |||||||| |||||| | |||||||||| | |||||||||||| || |    
T  6426711 ttcaaatcaagtagctgtaaattggggaaaatggaagcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaatt 6426810  T
Q  115 gaggatatacactagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaa 214  Q
    |||| ||||||| |||||   ||| | | | | |||| || | ||||  ||||||||| | |||||||| |||||| ||||||||||| |||||| ||||    
T  6426811 gagggtatacaccagaatgttctaaagtatttatcccaattgatgtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaaacaa 6426910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 6602970 - 6602879
Alignment:
Q  131 attccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaatt 222  Q
    |||| ||||| |||||||||| ||| |||||| ||||||||||| ||||||||||||||| |||||| |||| |||||| |||||| |||||    
T  6602970 attctctacattctctttcccaatatctgtgtcttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataatt 6602879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6589236 - 6589117
Alignment:
Q  1 tgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaata 100  Q
    ||||||| |||| ||| |||||||| |  | |||||||||||||| |||||| || ||||  || ||| ||||| |||||| | ||||| |||| |||||    
T  6589236 tgttattacaagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaata 6589137  T
Q  101 gagagactttaactgaggat 120  Q
    |||||||||||| |||||||    
T  6589136 gagagactttaattgaggat 6589117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 14821022 - 14821109
Alignment:
Q  129 gaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaagg 216  Q
    |||||||||||| |||||||||| ||||| ||| ||||||||||||  ||| ||||||||   ||||| |||||||||||| ||||||    
T  14821022 gaattccctacattctctttcccaatagccgtgcattccattttgacttcaataagtgaataacagttcctaacgagtgaaaacaagg 14821109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 6410336 - 6410431
Alignment:
Q  127 tagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaatt 222  Q
    |||||| |||||||||||||||||| |||  |||   || |||||||| |||| |||||||||| || ||||||||||||||| ||  ||||||||    
T  6410336 tagaatgccctacactctctttcccaatacttgttcttttcattttgatctcattaagtgaaggacaatttctaacgagtgaaaactgggctaatt 6410431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 7993914 - 7993860
Alignment:
Q  164 ttccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggct 218  Q
    |||||||||||  |||| |||||| || |||||||||||||||||| ||||||||    
T  7993914 ttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggct 7993860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 6423597 - 6423634
Alignment:
Q  177 tcactaagtgaagggcagtttctaacgagtgaatacaa 214  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  6423597 tcactaagtgaaggacagtttctaacgagtgaaaacaa 6423634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 20477844 - 20477756
Alignment:
Q  134 ccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaatt 222  Q
    |||| ||||||||||||| |||| ||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  20477844 cccttcactctctttcccgatagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaatt 20477756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 32267805 - 32267874
Alignment:
Q  127 tagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtt 196  Q
    ||||| || ||| ||||| |||||| |||  ||||| ||||||||||| |||||||||||||||||||||    
T  32267805 tagaactctctagactctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagtt 32267874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 33160850 - 33160924
Alignment:
Q  140 actctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaa 214  Q
    |||||||||||| |||| |||| ||||||||||||  |||||||||||||| |||||| |||| |||||| ||||    
T  33160850 actctctttcccaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaa 33160924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 29658709 - 29658635
Alignment:
Q  140 actctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaa 214  Q
    |||||| ||||| |||| |||||||||||||||||  |||||||||||||| || ||| ||||||| ||| ||||    
T  29658709 actctcattcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaa 29658635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 29691224 - 29691150
Alignment:
Q  140 actctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaa 214  Q
    |||||| ||||| |||| |||||||||||||||||  |||||||||||||| || ||| ||||||| ||| ||||    
T  29691224 actctcattcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaa 29691150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 29718736 - 29718662
Alignment:
Q  140 actctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaa 214  Q
    |||||| ||||| |||| |||||||||||||||||  |||||||||||||| || ||| ||||||| ||| ||||    
T  29718736 actctcattcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaa 29718662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 19468237 - 19468185
Alignment:
Q  164 ttccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaagg 216  Q
    ||||||||||| ||||||||||||||| || || |||||||||| | ||||||    
T  19468237 ttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaagg 19468185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 17627825 - 17627734
Alignment:
Q  127 tagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggct 218  Q
    ||||||||  || |||||||| ||| |||| |||| |||||||||| | |||| |||||||||| || || |||||||||||| ||||||||    
T  17627825 tagaattctttagactctcttccccaatagatgtgcattccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggct 17627734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 13470641 - 13470520
Alignment:
Q  5 attgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagaga 104  Q
    |||||||  |||||||||||| || || ||||||||||||  |||||| || ||||  ||   ||||||| |||||| || |||| | || |||||||||    
T  13470641 attgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatgatgccttcatcacttaaccattgattttttcccaaatagaga 13470542  T
Q  105 gactttaactgaggatatacac 126  Q
    |||||||| ||||| |||||||    
T  13470541 gactttaattgagggtatacac 13470520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 51764349 - 51764228
Alignment:
Q  5 attgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagaga 104  Q
    |||||||| ||| |||||||| || || ||||||||||||| |||||| || ||||  ||  |||||||| |||||| |  ||||  ||| | |||||||    
T  51764349 attgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgtattttcacccagatagaga 51764250  T
Q  105 gactttaactgaggatatacac 126  Q
    |||||||| ||||| |||||||    
T  51764249 gactttaattgagggtatacac 51764228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 10634184 - 10634128
Alignment:
Q  146 tttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaac 202  Q
    |||||| ||||  ||| |||||||||||| ||||||||||||||| |||||||||||    
T  10634184 tttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtttctaac 10634128  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 21834276 - 21834174
Alignment:
Q  16 tcaaatcaagaagttgtaaattggggaaaaaggaagctaatattacaattttttcatcagttaaccgttaatttctacctaaatagagagactttaactg 115  Q
    |||||||||| || ||||||||||||||||  ||||| || ||||  ||| |||||||| |||||| | |||| |  || ||| ||||||||||||| ||    
T  21834276 tcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaagagagactttaattg 21834177  T
Q  116 agg 118  Q
    |||    
T  21834176 agg 21834174  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 547246 - 547339
Alignment:
Q  127 tagaattccctacactctctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaa 220  Q
    |||||||| ||||||||||  |||| ||   ||||  ||||||||||| ||||||||||||||  || || |||||||||| | ||||||||||    
T  547246 tagaattctctacactctccatcccaatttttgtgagttccattttgatctcactaagtgaagcacaattactaacgagtgcaaacaaggctaa 547339  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 3438392 - 3438323
Alignment:
Q  153 atagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaatt 222  Q
    |||| |||| |||||||||| | ||||||||||||||| || || |||| ||||||| | ||||||||||    
T  3438392 atagatgtgcattccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaatt 3438323  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 10169868 - 10169816
Alignment:
Q  164 ttccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaagg 216  Q
    ||||||||||| ||||||||||||||| || || |||||||||| | ||||||    
T  10169868 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaagg 10169816  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 10177393 - 10177341
Alignment:
Q  164 ttccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaagg 216  Q
    ||||||||||| ||||||||||||||| || || |||||||||| | ||||||    
T  10177393 ttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaagg 10177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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