View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_76 (Length: 235)
Name: NF1910_high_76
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_76 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26155916 - 26156135
Alignment:
| Q |
1 |
ttacttacagcatcgatgttgttattgaagatgtcaaaaagttcttgtcggaaacacagtctgagattataattcttgaggttagaacagaatttggtca |
100 |
Q |
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| T |
26155916 |
ttacttacagcatggatgttgttattgaagatgtcaaaaagtttttgtcggaaacacagtctgagattataattcttgaggttagaacagaatttggtca |
26156015 |
T |
|
| Q |
101 |
tgatgatccacctgaatttgataagtatctggaagaacagctaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttg |
200 |
Q |
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| T |
26156016 |
tgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttg |
26156115 |
T |
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| Q |
201 |
ttacctaagagggttatatg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
26156116 |
ttacctaagagggttatatg |
26156135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26169214 - 26169433
Alignment:
| Q |
1 |
ttacttacagcatcgatgttgttattgaagatgtcaaaaagttcttgtcggaaacacagtctgagattataattcttgaggttagaacagaatttggtca |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169214 |
ttacttacagcatggatgttgttattgaagatgtcaaaaagtttttgtcggaaacacagtctgagattataattcttgaggttagaacagaatttggtca |
26169313 |
T |
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| Q |
101 |
tgatgatccacctgaatttgataagtatctggaagaacagctaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttg |
200 |
Q |
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| T |
26169314 |
tgatgatccacctgaatttgataagtatctggaagaacaattaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttg |
26169413 |
T |
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| Q |
201 |
ttacctaagagggttatatg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
26169414 |
ttacctaagagggttatatg |
26169433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 28094773 - 28094662
Alignment:
| Q |
69 |
ataattcttgaggttagaacagaatttggtcatgatgatccacctgaatttgataagtatctggaagaacagctaggtgagtttttgattcatcaagatg |
168 |
Q |
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||||| || ||||||||||| || |||||||| |||||||||| ||||| || ||||| || |||||| | |||| |||| ||| |||| ||||||| |
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| T |
28094773 |
ataatcctcgaggttagaactgagtttggtcacaatgatccacccgaattcgacaagtacctcgaagaaaacttaggcgagtacttggttcaccaagatg |
28094674 |
T |
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| Q |
169 |
atcatgtttttg |
180 |
Q |
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|| ||||||||| |
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| T |
28094673 |
ataatgtttttg |
28094662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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