View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_78 (Length: 234)
Name: NF1910_high_78
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_78 |
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Alignment Details
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 9001882 - 9001802
Alignment:
| Q |
135 |
catatatatcgtaagagcatcgtaacaattcatgagtttgtttcctcnnnnnnncaattcatgagtttgttacaataataac |
216 |
Q |
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| T |
9001882 |
catatatatcgtaagagcatcgtaacaattcatgagtttgttacctcaaaaaaacaattcatgagttt-ctacaataataac |
9001802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 9001901 - 9001869
Alignment:
| Q |
85 |
ggtgaatttcttcttcaaacatatatatcgtaa |
117 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
9001901 |
ggtgaatttcttcttcaaacatatatatcgtaa |
9001869 |
T |
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