View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1910_high_85 (Length: 225)
Name: NF1910_high_85
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_85 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 22138840 - 22139033
Alignment:
| Q |
16 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22138840 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtg |
22138939 |
T |
|
| Q |
116 |
tctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22138940 |
tctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttaaaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
22139033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 21987360 - 21987553
Alignment:
| Q |
16 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21987360 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtt |
21987459 |
T |
|
| Q |
116 |
tctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21987460 |
tctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttaaaatcagtaacttgtgtaacagaaggatttttagccactaatgct |
21987553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 21964924 - 21965117
Alignment:
| Q |
16 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21964924 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagataccaaaccatgtc |
21965023 |
T |
|
| Q |
116 |
tctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21965024 |
tctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttaaaatcagtaacttgtgtaacagaaggatttttagccactaatgct |
21965117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 18941661 - 18941471
Alignment:
| Q |
16 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
18941661 |
aggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcgttaaaagataccaaaccatgtc |
18941562 |
T |
|
| Q |
116 |
tctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
18941561 |
cctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttaaaatcagtaacttgtgtaacagaagtatttttagccactaat |
18941471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 21745299 - 21745484
Alignment:
| Q |
24 |
agcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgtctgtgtc |
123 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||| ||||| | ||||||| |||||||| |||||||| |||||||| | |||||||| | | || |
|
|
| T |
21745299 |
agcaaagcaacaagttgactagcagaggaaccagagaatggtctgccaggtccatcatctgtagtattcataaaaagatatcgaaccatgtctttacatc |
21745398 |
T |
|
| Q |
124 |
ttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggatttttagccactaatgct |
209 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21745399 |
ttgtagaagtgacactatagatgagtggtgtgaatcctttaaaatcagtaacttgtgtaagagaaggatttttagccaccaatgct |
21745484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 39749960 - 39749785
Alignment:
| Q |
17 |
ggcagtgagcaaagcaacaagttgactagcagaaggaccagaaaatggacacccaggtctctcatctgtcgtattcattaaaagatacctaaccatgtgt |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||| || ||| ||| | |||||||| |||||||| |
|
|
| T |
39749960 |
ggcagtaagcaaagcaacaagttgactagctgagggaccagagaatggacagccaggtctctcatcagtagtactcaaaacaagataccaaaccatgtcc |
39749861 |
T |
|
| Q |
117 |
ctgtgtcttgtagaagtaagactatagatgagtggtgtaaatcctttagaatcagtaacttgtgtaagagaaggat |
192 |
Q |
| |
|
| ||||||||| |||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
39749860 |
ttacatcttgtagaggtaatactatagatgagtggtgtgaatcctttaaaatcagttacttgtgtaagagaaggat |
39749785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University