View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_high_87 (Length: 224)
Name: NF1910_high_87
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_high_87 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 6811504 - 6811327
Alignment:
| Q |
19 |
agactttgaggcggattaatccaaatgtatatcattaagaaactaaacacnnnnnnnnnnnnnnnnatgattttttgatataatgtaagtttcttaaatc |
118 |
Q |
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| T |
6811504 |
agactttgaggcggattaattcaaatgtatatcattaagaaactaaacacatattatatatata--atgattttttgatataatgtaagtttgttaaatc |
6811407 |
T |
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| Q |
119 |
aacaaagacacaaaaacattttatgtgattttctcaactcagaggagattcggattatgtaataccaaaatctgaaaaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6811406 |
aacaaagacacaaaaacattttatgtgattttctcaactcagaggagattcggattatgtaataccaaaatctgaaaaaa |
6811327 |
T |
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