View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_high_94 (Length: 218)

Name: NF1910_high_94
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_high_94
NF1910_high_94
[»] chr4 (1 HSPs)
chr4 (16-204)||(17853254-17853442)
[»] chr3 (12 HSPs)
chr3 (16-207)||(10517032-10517223)
chr3 (16-207)||(11782313-11782504)
chr3 (16-207)||(10500121-10500315)
chr3 (14-207)||(10526903-10527099)
chr3 (140-188)||(11768797-11768845)
chr3 (140-182)||(11149312-11149354)
chr3 (140-207)||(10541518-10541585)
chr3 (140-182)||(8860855-8860897)
chr3 (140-182)||(10376303-10376345)
chr3 (140-182)||(10434502-10434544)
chr3 (140-182)||(10888875-10888917)
chr3 (140-182)||(11160475-11160517)
[»] chr6 (1 HSPs)
chr6 (152-194)||(31680209-31680251)
[»] chr2 (1 HSPs)
chr2 (140-182)||(26906466-26906508)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 17853254 - 17853442
Alignment:
Q  16 catcttctccatcttggaattgatctttatagatgaaggtaaattctgcagctgatcaactggtgttttctccaccttgcacctcaaggcatcgtagttg 115  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17853254 catcttctccatcttcaaattgatctttatagatgaaggtaaattctgcagctgatcaactggtgttttctccaccttgcacctcaaggcatcgtagttg 17853353  T
Q  116 attaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtctctg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17853354 attaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtttctg 17853442  T

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Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10517223 - 10517032
Alignment:
Q  16 catcttctccatcttggaattgatctttatagatgaaggtaaattctgcagctgatcaactggtgttttctccaccttgcacctcaaggcatcgtagttg 115  Q
    |||||||||||||||||||||||||||||||  |||||| |  |||||||||||||||||||| |||||||||||| || |||||| | ||| |||| |     
T  10517223 catcttctccatcttggaattgatctttataattgaaggaagcttctgcagctgatcaactggcgttttctccaccgtggacctcaggacatggtagctt 10517124  T
Q  116 attaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtctctgctc 207  Q
    |||||||| |||| |||||| |  |||||||| || |||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  10517123 attaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctc 10517032  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 11782313 - 11782504
Alignment:
Q  16 catcttctccatcttggaattgatctttatagatgaaggtaaattctgcagctgatcaactggtgttttctccaccttgcacctcaaggcatcgtagttg 115  Q
    |||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||| || || ||| | ||| |||| |     
T  11782313 catcttctccatcttggaattgatctttatagttgaaggcaggttctgcagctgatcaactggtgttttctccaccgtggacttcaggacatggtagctt 11782412  T
Q  116 attaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtctctgctc 207  Q
    ||||| || |||| |||||| |  ||||| || || |||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  11782413 attaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatctttgaactgtttctgctc 11782504  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 10500315 - 10500121
Alignment:
Q  16 catcttctccatcttggaattgatctttat---agatgaaggtaaattctgcagctgatcaactggtgttttctccaccttgcacctcaaggcatcgtag 112  Q
    |||||||||||||||| ||||||||||| |    |||||||| || || |||| |||| || ||||||| ||||||| ||||| || ||||| | | |||    
T  10500315 catcttctccatcttgtaattgatctttgttgatgatgaaggcaagttttgcaactgaccagctggtgtgttctccagcttgcgccgcaaggaagcatag 10500216  T
Q  113 ttgattaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtctctgctc 207  Q
     | ||||| ||||||| |||||| |  |||||||| | ||||||||| |||||||||||||||||||||||||||||  |||||||| |||||||    
T  10500215 cttattaagtcgagcaaatcttcagcatcaaagattgtgtctttcaagtcatcaagccattgtttgacaggaagatcagtgaattgtttctgctc 10500121  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 10527099 - 10526903
Alignment:
Q  14 atcatcttctccatcttggaattgatctttatagatgaag---gtaaattctgcagctgatcaactggtgttttctccaccttgcacctcaaggcatcgt 110  Q
    ||||| |||||||||||||||||||||||||||||||| |   | || | ||||| ||||| ||||||  | || ||||||||||||| ||  |||||||    
T  10527099 atcattttctccatcttggaattgatctttatagatgacgaatgcaagtcctgcaactgattaactggcatgttttccaccttgcaccgcagagcatcgt 10527000  T
Q  111 agttgattaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtctctgctc 207  Q
    || ||||||| || |||| |||||| |  ||||| || || |||||||| |||| ||||||||||||||||||||| ||  |||| ||| |||||||    
T  10526999 agctgattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatgaagccattgtttgacaggaaggtcagtgaactgtttctgctc 10526903  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 11768845 - 11768797
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagat 188  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  11768845 tcaaagatagcgtctttcaagtcatcaagccattgtttgacagcaagat 11768797  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 11149312 - 11149354
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 182  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  11149312 tcaaagatagcatctttcaagtcatcaagccattgtttgacag 11149354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 10541585 - 10541518
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtctctgctc 207  Q
    |||||||| || |||||||| |||||||||||||| ||||||||||| ||  |||| ||| |||||||    
T  10541585 tcaaagattgcatctttcaagtcatcaagccattgcttgacaggaaggtcaatgaactgtttctgctc 10541518  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 8860897 - 8860855
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  8860897 tcaaagagagcatctttcaagtcatcaagccattgtttgacag 8860855  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 10376303 - 10376345
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 182  Q
    ||||||||||| |||||||| |||||||||||||| |||||||    
T  10376303 tcaaagatagcatctttcaagtcatcaagccattgcttgacag 10376345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 10434502 - 10434544
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  10434502 tcaaagacagcatctttcaagtcatcaagccattgtttgacag 10434544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 10888917 - 10888875
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  10888917 tcaaagacagcatctttcaagtcatcaagccattgtttgacag 10888875  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 11160475 - 11160517
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 182  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||    
T  11160475 tcaaagacagcatctttcaagtcatcaagccattgtttgacag 11160517  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 31680209 - 31680251
Alignment:
Q  152 tctttcaaatcatcaagccattgtttgacaggaagatcgttga 194  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  31680209 tctttcaactcatcaagccattgtttgacaggaagattgttga 31680251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 26906508 - 26906466
Alignment:
Q  140 tcaaagatagcgtctttcaaatcatcaagccattgtttgacag 182  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  26906508 tcaaagatagcatctttcaagtcatcaagccattgtttgacag 26906466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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