View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1910_low_1 (Length: 831)
Name: NF1910_low_1
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_1 |
 | |
|
| [»] chr8 (7 HSPs) |
| |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 157 - 831
Target Start/End: Complemental strand, 22470763 - 22470107
Alignment:
| Q |
157 |
tcatttctatgttaggatatcaacaaaaacatcattaaaacctcaacaaattttgtctaatgttgattgattgaatcgattcatttccttgcctgagcac |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22470763 |
tcatttctatgttaggatatcaacaaaaacatcattaaaacctcaacaaat------------------attgaatcgattcatttccttgcctgagcac |
22470682 |
T |
|
| Q |
257 |
ttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcac |
356 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22470681 |
ttttgaagcatatcaatattcatctggaaaccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcac |
22470582 |
T |
|
| Q |
357 |
atgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttgccactaatattgcacttatcactcatgtctgtagatagctatacccata |
456 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22470581 |
atgtctgaattgaatcatacttagtgtgattcgaatcaagtcgttgttttgccactaatattgcacttatcactcatgtctgtatatagctatacccata |
22470482 |
T |
|
| Q |
457 |
caccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttt |
556 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
22470481 |
caccttccaacttcctgaatatattgctaataacattcttgagtctccaaccctctctctccacttgtttttaagattaaacctttttcctaatgattta |
22470382 |
T |
|
| Q |
557 |
tgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagg |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22470381 |
tgtggactttgaatcatagattgcaagagtgatatatgaattgtagattggtttctttcaaggaatttgattgaggatcaaggttctaaaagaaaagagg |
22470282 |
T |
|
| Q |
657 |
gatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggtca |
756 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22470281 |
gatttctttccacctccaatggaaattttgagggtctttctaacttctcaagttcaaggggatccaagcttcggacatagcaaagaagaattcaaggtca |
22470182 |
T |
|
| Q |
757 |
cacgcaacttaactcacattatgaaacaagacaaaacactgtagaagtgacaagaaatattatgtaccagcaata |
831 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22470181 |
cacgcaacttaactcacattatgaaacaagacaaaacactgtagaagtgacaagaaatattatgtacctgcaata |
22470107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 227 - 749
Target Start/End: Complemental strand, 22472172 - 22471649
Alignment:
| Q |
227 |
ttgaatcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaat |
326 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||||||||| ||| ||| |||||| | || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22472172 |
ttgaatcaattcattttcttgccttagcacttttgaagcgtattaatcttcatccgaaaaccacttgattcgattcaaatgttccttgaatcgtatcgat |
22472073 |
T |
|
| Q |
327 |
ctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcactta |
425 |
Q |
| |
|
| ||||||| | |||||||||||||||| ||| ||||| |||||| ||||| |||||||| |||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
22472072 |
tttcatagctccaaatttatcctttttcacttgtgtgaatcgaatcacacttagtgtgattcaaatcaagtcattgtttttgccacaaatattgcactta |
22471973 |
T |
|
| Q |
426 |
tcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgat |
525 |
Q |
| |
|
|||||| || || || ||||||||||||||||||||||||||||| ||| || || ||||||||||| |||||| | ||||||||| |||||||| | |
|
|
| T |
22471972 |
tcactcctgcctatatgtagctatacccatacaccttccaacttaccaaatcaatgacaaataacattctagagtcttcaaacctctctatccacttgtt |
22471873 |
T |
|
| Q |
526 |
tttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttg |
625 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||| || ||||| ||||||||||| ||||| |||| || ||||| | || ||||||||||| |||||| |
|
|
| T |
22471872 |
ctttagattaaacattttttctaagattttttgtcgattttgagtcatagattgctagagtactataagatttgtacaatggtttctttcaaggaatttg |
22471773 |
T |
|
| Q |
626 |
attgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagc |
725 |
Q |
| |
|
|||||||||||| | |||||| |||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
22471772 |
attgaggatcaaaggtctaaataaaaagaggaatttctttccacctccaaggggaattgtgggggtctttctaacttctcaagttcaaggggatccaagc |
22471673 |
T |
|
| Q |
726 |
ttcggacatagcaaagaagaattc |
749 |
Q |
| |
|
||| |||||| ||| |||||||| |
|
|
| T |
22471672 |
ttcaaacatagaaaataagaattc |
22471649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 466 - 756
Target Start/End: Original strand, 8988930 - 8989220
Alignment:
| Q |
466 |
acttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggact |
564 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||| ||||||| |||||||||| | |||| ||||||| |||||||||| |||| |||||||| | |
|
|
| T |
8988930 |
acttactgaatcaattgcaaataacattctagagtctcctaacctctgtctccacttgttcttcatattaaacattttttctaa-gattctttgtggatt |
8989028 |
T |
|
| Q |
565 |
ttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctt |
664 |
Q |
| |
|
|| | ||||||||||| |||||| |||| || ||||| |||| ||||||||||| || |||||||||||||| || |||||||||||||||| |||| || |
|
|
| T |
8989029 |
tttagtcatagattgctagagtgctataagagttgtacattggtttctttcaaggaacttgattgaggatcatgggtctaaaggaaaagaggaatttgtt |
8989128 |
T |
|
| Q |
665 |
tccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggtca |
756 |
Q |
| |
|
|||||||| || | ||||||| ||| ||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8989129 |
tccacctctaaggggaattgtggggggttttctaacttctcaagtttaagccgatccaagctttggacatagcaacgaagaattcaaggtca |
8989220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 311 - 754
Target Start/End: Complemental strand, 28915385 - 28914940
Alignment:
| Q |
311 |
cttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gcc |
409 |
Q |
| |
|
||||| |||||| ||||| ||||||| |||||| ||| ||||||| ||||| ||| |||||||| |||| | ||| |||| | ||||| |||| ||| |
|
|
| T |
28915385 |
cttgattcgtattaatct-catagcttcagatttttcccttttcacgtgtctaaatcgaatcataattaacattatttgaataatatagttatttttgcc |
28915287 |
T |
|
| Q |
410 |
actaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacc |
509 |
Q |
| |
|
|| || ||||||||| |||||||||||| || |||||||||||||||||| |||||||| | ||| ||| | ||||||||| | |||||||| ||| |
|
|
| T |
28915286 |
acaaaaattgcacttgtcactcatgtctatatatagctatacccatacactttccaactcataaaatcaattgcaaataacattttagagtctccaaact |
28915187 |
T |
|
| Q |
510 |
tctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgtt |
608 |
Q |
| |
|
||||||| ||||| | |||||||||||| ||||||||| |||| |||||||| ||||| ||||| ||||| |||||| || | |||||||| |||| | |
|
|
| T |
28915186 |
tctctcttcactttctcttcagattaaacactttttctaa-gattctttgtggattttgattcataaattgctagagtgctacaagaattgtacattggt |
28915088 |
T |
|
| Q |
609 |
ttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgaggg--tctttctaacttctca |
706 |
Q |
| |
|
|||||||| | || ||||||||||||||||| |||| |||||| ||||||||||||||| |||| | ||||||| ||| |||||||||||||| | |
|
|
| T |
28915087 |
ttctttcagggaacttgattgaggatcaagggtctacgaaaaaagacggatttctttccaccaccaacgggaattgtggggggttctttctaacttctta |
28914988 |
T |
|
| Q |
707 |
aatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||||||| |||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
28914987 |
cgtttaaggagatccaagcttcaaacttagaaaagaagaattcaaggt |
28914940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 497 - 668
Target Start/End: Complemental strand, 24176047 - 24175875
Alignment:
| Q |
497 |
gagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaa |
596 |
Q |
| |
|
|||||||| |||||||||||||| ||| | |||||||||||| |||||||||| || |||||| |||||| ||||||||| | |||||| |||| | | |
|
|
| T |
24176047 |
gagtctccaaacctctctctccatttgttcttcagattaaacattttttctaagaatcattgtggtctttgagtcatagattactagagtgctataagga |
24175948 |
T |
|
| Q |
597 |
ttgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggatttctttcca |
668 |
Q |
| |
|
||||| |||| || |||||||| | ||| || | |||||||||| |||| ||| |||| |||||||||||| |
|
|
| T |
24175947 |
ttgtatattgattgctttcaaggatcttggttaggaatcaaggttcaaaagtgaatagagtgatttctttcca |
24175875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 14180290 - 14180223
Alignment:
| Q |
167 |
gttaggatatcaacaaaaacatcattaaaac--ctcaacaaattttgtctaatgttgattgattgaat |
232 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
14180290 |
gttaggatatcaacaaatgcatcaataaaagaactcaacaaagtttgtttaatgttgattgattgaat |
14180223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 675
Target Start/End: Complemental strand, 17730108 - 17729987
Alignment:
| Q |
555 |
tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaag |
653 |
Q |
| |
|
||||||| |||| | |||||| ||| |||||| ||| | ||||||||||| |||| |||||| || ||||||||| ||||||| || | || ||| | |
|
|
| T |
17730108 |
tttgtggtcttttagtcatagtttgttagagtgctattggtattgtagattggtttcattcaaggaacttgattgagaatcaagggtccatagtgaatcg |
17730009 |
T |
|
| Q |
654 |
agggatttctttccacctccaa |
675 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
17730008 |
agtgatttctttccacctccaa |
17729987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 227 - 754
Target Start/End: Original strand, 9633582 - 9634110
Alignment:
| Q |
227 |
ttgaatcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaat |
326 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||| | ||||||| ||||| ||||| | |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
9633582 |
ttgaatagattcatttccttgcctctactatttcgaatcgtatcaatcttcatatggaaaatagttgattcgattcaaatgttcattgaatcatatcaat |
9633681 |
T |
|
| Q |
327 |
ctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttg-ccactaatattgcactta |
425 |
Q |
| |
|
|| ||||||| | |||| | |||||||||||||||||| || |||| |||| | | || ||||||||| |||||||| |||| || || |||||| |
|
|
| T |
9633682 |
cttcatagcttcaaatttcccttttttcacatgtctgaatcgattcatgcttagtaagttttgaatcaagtcgttgtttttaccacaaaaataacactta |
9633781 |
T |
|
| Q |
426 |
tcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgat |
525 |
Q |
| |
|
|||||||||| | || |||| ||||| |||||||||||||||| | ||||| ||| | |||| || ||| |||||||| ||||||| | ||||| || | |
|
|
| T |
9633782 |
tcactcatgtatatatatagttatacacatacaccttccaactcaatgaatcaattgcaaatatcaatctagagtctccaaacctctttgtccacatgtt |
9633881 |
T |
|
| Q |
526 |
tttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttg |
625 |
Q |
| |
|
|| ||||||||| ||||||||| ||| |||||||| ||||||||||||| |||| ||||||||| || ||||| |||| |||||||||||||| ||| |
|
|
| T |
9633882 |
cttgagattaaacactttttctaa-gatctttgtggattttgaatcatagaatgcataagtgatataggagttgtatattggtttctttcaagaaacttg |
9633980 |
T |
|
| Q |
626 |
attgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaa |
723 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
9633981 |
attgaggatcaagggtctaaaggaaaagagagatttctttcaacctccaaag-aaattgtgggggtctttctaacttctcaaaggttcaaggggatccaa |
9634079 |
T |
|
| Q |
724 |
gcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||||| |||||| ||||||||||||| |||| |
|
|
| T |
9634080 |
gcttcagacataacaaagaagaattcgaggt |
9634110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 355 - 754
Target Start/End: Complemental strand, 21936432 - 21936028
Alignment:
| Q |
355 |
acatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttg-ccactaatattgcacttatcactcatgtctgtagatagctataccc |
453 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||| ||||| || || |||| |||| ||||||||| ||||||||| | || || | || ||||||| |
|
|
| T |
21936432 |
acatgtctgaatataatcatacttactatgattcaaatcacgtctttttttttaccacaaatattgcagttatcactccttcctatatacagatataccc |
21936333 |
T |
|
| Q |
454 |
atacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatg-- |
551 |
Q |
| |
|
||||| ||||||||||||||||| ||| | ||||||||||| |||||||| |||||||||| ||||||| | || ||||||||| |||||||||| |
|
|
| T |
21936332 |
atacaacttccaacttactgaatcaattgcaaataacattctagagtctccaaacctctctccccacttgttctttagattaaacactttttctaatatt |
21936233 |
T |
|
| Q |
552 |
-att-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaagga |
649 |
Q |
| |
|
||| |||||||| ||||| ||||||||||| |||||| |||| |||| || ||| ||||||| || || |||||||||||||||| |||||| || |
|
|
| T |
21936232 |
aattatttgtggaatttgagtcatagattgctagagtgctataggaatcatacattagtttcttttgaggaacttgattgaggatcaagtgtctaaaaga |
21936133 |
T |
|
| Q |
650 |
aaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattc |
749 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
21936132 |
aaagagggatttctttccacctccaaggggaattgtgggggtctttctaacttctcaagttctgggggatctaagcttcgaacatagcaaagaagaattc |
21936033 |
T |
|
| Q |
750 |
aaggt |
754 |
Q |
| |
|
||||| |
|
|
| T |
21936032 |
aaggt |
21936028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 259 - 754
Target Start/End: Complemental strand, 7230478 - 7229982
Alignment:
| Q |
259 |
ttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcct-ttttcaca |
357 |
Q |
| |
|
||||| |||||| |||||| ||||||| | ||||||| ||||| |||||| ||||||||||||||||| || |||| | ||| |||| ||||||| |
|
|
| T |
7230478 |
ttgaatcatatcgatattcgtctggaaaacctttgattcaattcacatgttctttgaatcgtatcaatcttcaaagcttcaacttt-tcctattttcacg |
7230380 |
T |
|
| Q |
358 |
tgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagatagctatacccata |
456 |
Q |
| |
|
||||||||| | ||||||||| | |||||||||||| || ||| |||| |||||||| ||| ||||| |||||||||||| || ||||||| | || | |
|
|
| T |
7230379 |
tgtctgaatcaattcatacttagtatgattcgaatcatgtcgttatttttgccactaaaatttcacttgtcactcatgtctatatatagctaaaaacaca |
7230280 |
T |
|
| Q |
457 |
caccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttt |
556 |
Q |
| |
|
||||||||||| | ||||| | || | |||| || ||| |||| | | |||||||||||| ||||| | || ||||||||| ||||||||| ||| || |
|
|
| T |
7230279 |
taccttccaactcattgaattt-ttgcaaatatcactctagagtatacaaacctctctctctacttgttcttaagattaaacactttttctaa-gatctt |
7230182 |
T |
|
| Q |
557 |
tgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagg |
656 |
Q |
| |
|
||| || ||||| ||||||||| | || || | || || ||||| |||| ||||||||||| || |||||||||| |||| | |||||||||||||| | |
|
|
| T |
7230181 |
tgtagattttgagtcatagatttctaggatgctctaagagttgtacattggtttctttcaaggaacttgattgaggctcaaagatctaaaggaaaagaag |
7230082 |
T |
|
| Q |
657 |
gatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||| ||||||||||||||| | || | | |||| |||||||||||||||| || ||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
7230081 |
gatatctttccacctccaagggaattatggggggtgtttctaacttctcaaaggttcaaggggatccaagcttccaacatagaaaataagaattcaaggt |
7229982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 573 - 696
Target Start/End: Original strand, 4566895 - 4567018
Alignment:
| Q |
573 |
tagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctc |
672 |
Q |
| |
|
|||||||| |||||| |||| |||||||| |||| ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
4566895 |
tagattgctagagtgctataagaattgtacattggtttcttttaaggaacttgattgaggatcaagggtctaaaggaaaagagggatttcttttcacctc |
4566994 |
T |
|
| Q |
673 |
caatgaaaattgtgagggtctttc |
696 |
Q |
| |
|
| | | ||||||| ||||||||| |
|
|
| T |
4566995 |
ctaggtgaattgtgggggtctttc |
4567018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 754
Target Start/End: Original strand, 28489727 - 28489781
Alignment:
| Q |
700 |
cttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
|||||||| || ||||||||||||||| ||| || | |||||||||||||||||| |
|
|
| T |
28489727 |
cttctcaagttcaaggggatccaagctccgggcacaacaaagaagaattcaaggt |
28489781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 227 - 754
Target Start/End: Complemental strand, 13603664 - 13603136
Alignment:
| Q |
227 |
ttgaatcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaat |
326 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||| | ||||||| ||||| ||||| | |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
13603664 |
ttgaatagattcatttccttgcctctactatttcgaatcgtatcaatcttcatatggaaaatagttgattcgattcaaatgttcattgaatcatatcaat |
13603565 |
T |
|
| Q |
327 |
ctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttg-ccactaatattgcactta |
425 |
Q |
| |
|
|| ||||||| | |||| | |||||||||||||||||| || |||| |||| | | || ||||||||| |||||||| |||| || || |||||| |
|
|
| T |
13603564 |
cttcatagcttcaaatttcccttttttcacatgtctgaatcgattcatgcttagtaagttttgaatcaagtcgttgtttttaccacaaaaataacactta |
13603465 |
T |
|
| Q |
426 |
tcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgat |
525 |
Q |
| |
|
|||||||||| | || |||| ||||| |||||||||||||||| | ||||| ||| | |||| || ||| |||||||| ||||||| | ||||| || | |
|
|
| T |
13603464 |
tcactcatgtatatatatagttatacacatacaccttccaactcaatgaatcaattgcaaatatcaatctagagtctccaaacctctttgtccacatgtt |
13603365 |
T |
|
| Q |
526 |
tttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttg |
625 |
Q |
| |
|
|| ||||||||| ||||||||| ||| |||||||| ||||||||||||| |||| ||||||||| || ||||| |||| |||||||||||||| ||| |
|
|
| T |
13603364 |
cttgagattaaacactttttctaa-gatctttgtggattttgaatcatagaatgcataagtgatataggagttgtatattggtttctttcaagaaacttg |
13603266 |
T |
|
| Q |
626 |
attgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaa |
723 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
13603265 |
attgaggatcaagggtctaaaggaaaagagagatttctttcaacctccaaag-aaattgtgggggtctttctaacttctcaaaggttcaaggggatccaa |
13603167 |
T |
|
| Q |
724 |
gcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||||| |||||| ||||||||||||| |||| |
|
|
| T |
13603166 |
gcttcagacataacaaagaagaattcgaggt |
13603136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 413 - 754
Target Start/End: Complemental strand, 14118800 - 14118457
Alignment:
| Q |
413 |
aatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctct |
512 |
Q |
| |
|
|||||||||||||||||| || | || |||||||||||||||| ||||||| || ||| | |||| || |||||| |||||| | ||||||| |
|
|
| T |
14118800 |
aatattgcacttatcacttattcttatatatagctatacccataccacttccaaaatattgagttaattatagctatcattctagagtcttcaaacctct |
14118701 |
T |
|
| Q |
513 |
ctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttc |
611 |
Q |
| |
|
|||||||||| | || ||||||||| |||||||||| |||| |||||||| ||||| | ||| ||||| || ||| |||| | ||||||||||| |||| |
|
|
| T |
14118700 |
ttctccacttgttattgagattaaacattttttctaa-gattctttgtggattttgagttatatattgctagggtgctatagggattgtagattggtttc |
14118602 |
T |
|
| Q |
612 |
tttcaagaaatttgattgaggatcaaggttctaaagg-aaaagagggatttctttccacctccaatg-aaaattgtgagggtctttctaa-cttctcaaa |
708 |
Q |
| |
|
||||||| || |||||| | ||||||| || ||||| ||||||| |||||||||||||||||| | | ||||| | |||||||||| ||||||| |
|
|
| T |
14118601 |
tttcaaggaacttgatttggaatcaagggtccaaaggaaaaagagaaatttctttccacctccaaggtgattttgtg-gagtctttctaatcttctcacg |
14118503 |
T |
|
| Q |
709 |
tttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||| |||| ||| |||| |
|
|
| T |
14118502 |
ttcaaggggatccaatcttcggacatagaaaataagagttcgaggt |
14118457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 44987490 - 44987419
Alignment:
| Q |
164 |
tatgttaggatatcaacaaaaacatcattaaaac--ctcaacaaattttgtctaatgttgattgattgaatc |
233 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||| ||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
44987490 |
tatgttaagatttcaacataaacatcattaaaagaactcgacaaattttgtataatgttgattaattgaatc |
44987419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 256 - 754
Target Start/End: Complemental strand, 18831415 - 18830916
Alignment:
| Q |
256 |
cttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttca |
355 |
Q |
| |
|
|||||||| | ||||||| ||||||||||| |||||| |||||||| |||| || |||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
18831415 |
cttttgaatcgtatcaatcttcatctggaaaccacttaattcgattaaaatattgcttgaatcgtatcaatcttcatagctcttgatttatcctttttca |
18831316 |
T |
|
| Q |
356 |
catgtctgaattgaatcatacttaatgtgattcgaatcaagtagttg-ttttgccactaatattgcacttatcactcatgtctgtagatagctataccca |
454 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| |||| ||||| ||| ||||||||||||||||||| || || || |||||||||| | |
|
|
| T |
18831315 |
catgtctgaatcgaatcatacttaacgtgattcgaatcaagtcgttgtttttggcacaaatattgcacttatcactcctgcctatatgtagctataccta |
18831216 |
T |
|
| Q |
455 |
tacaccttccaacttactgaatatattactaataacattcttgagtctcccaa--------cctctctctccacttgattttcagattaaaccttttttc |
546 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||| |||| |||||||| || ||||||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
18831215 |
tacaccttccaactcactgaatcagatgcaaataactttctagagtctccaaagccctctctctctctctccacttgttgttcagatttaacattttttc |
18831116 |
T |
|
| Q |
547 |
taatgatt-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaa |
645 |
Q |
| |
|
||| |||| ||||||| ||||| ||||||||||| |||||| |||| |||||||| |||| ||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
18831115 |
taa-gattcattgtggattttgagtcatagattgctagagtgctataggaattgtacattggtttctttcaaggaacttgattgaggatcaagggtctaa |
18831017 |
T |
|
| Q |
646 |
aggaaaagagggatttctttccacctccaatgaaaat--tgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaa |
743 |
Q |
| |
|
||||||| |||| |||||||| | |||| || | ||||||||||||||| |||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
18831016 |
aggaaaacaggg----------acctccaagggaaattatgggggggtctttctaacttttcaagttgaaggggatccaagcttcagacatagcaaagaa |
18830927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 290 - 754
Target Start/End: Original strand, 27877664 - 27878126
Alignment:
| Q |
290 |
cttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcg |
389 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| || ||||||| |||||||||| ||| ||||||||||||| |||||| |||| | ||| ||| |
|
|
| T |
27877664 |
cttgattcgattcaaatgttactttaatcgtatcaaccttcatagctccagatttatccatttacacatgtctgaatcgaatcacactttctttgaatcg |
27877763 |
T |
|
| Q |
390 |
aatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaata |
488 |
Q |
| |
|
||||| || |||||||| ||| |||| ||||||||||||| || | || ||| |||||||||||||| ||||||||||||||| ||| | ||| |
|
|
| T |
27877764 |
aatcatgtcgttgtttttgcctaaaatactgcacttatcacttctgcttatatataactatacccatacactttccaacttactgaagcaattgcaaatg |
27877863 |
T |
|
| Q |
489 |
acattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaagagtg |
587 |
Q |
| |
|
||||||| ||| |||| |||||||||| |||||| | |||||||||||| |||||| || |||| |||||||| ||||| |||||||||| |||| |
|
|
| T |
27877864 |
acattctagagcctccaaacctctctc--cacttgttattcagattaaacactttttcgaa-gattctttgtggattttgagtcatagattgttttagtg |
27877960 |
T |
|
| Q |
588 |
atatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtga |
687 |
Q |
| |
|
|||||| |||||| |||| ||||||| ||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||| |
|
|
| T |
27877961 |
ctatatggattgtacattggtttctttgaaggaacttgattgaggatcaaggttctaaaggaaaagaggaatttgtttccacctccaaggtgaattgtgg |
27878060 |
T |
|
| Q |
688 |
gggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
|||| |||||||||| |||| | ||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
27878061 |
gggt-tttctaacttatcaagctcaaggggatctaagctttagacatagcaaagaagaatttaaggt |
27878126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 267 - 754
Target Start/End: Original strand, 18371033 - 18371519
Alignment:
| Q |
267 |
tatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaat |
366 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |||||| | ||| ||||||||||||||| ||||| |
|
|
| T |
18371033 |
tatcaatcatcatttggaaaacacttgattcgattcacatgttttttgaatcgtatcaatctttatagcttcaattttctcctttttcacatgtttgaat |
18371132 |
T |
|
| Q |
367 |
tgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttcca |
465 |
Q |
| |
|
|| ||||||||| | |||| |||||||| |||||||| |||| || |||||||||||| ||| |||| | |||||||||||||| | |
|
|
| T |
18371133 |
cgattcatacttagtacaattcaaatcaagtcgttgtttttgccaaaaag-ttgcacttatcaatcacgtct----------acacccatacaccttcaa |
18371221 |
T |
|
| Q |
466 |
acttactgaatatattactaataacattcttgagtctcccaacctctctctcca--------cttgattttcagattaaaccttttttctaatgattttt |
557 |
Q |
| |
|
||| ||| ||| ||| | |||| |||||| ||||||| |||||||||||| | |||| | || ||||||||| |||||||||| || ||| |
|
|
| T |
18371222 |
actcactaaatcaattgcaaatatcattctagagtctctaaacctctctctctatatatatacttgttcttgagattaaacactttttctaat-atattt |
18371320 |
T |
|
| Q |
558 |
gtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagaggg |
657 |
Q |
| |
|
|| || ||||| ||||||||| | ||| || ||| || || || |||| ||||||||||| || ||||||||||||||||| || ||||||||| || | |
|
|
| T |
18371321 |
gtagattttgagtcatagatttctagattgccataggagttttacattggtttctttcaaggaacttgattgaggatcaagggtccaaaggaaaatagag |
18371420 |
T |
|
| Q |
658 |
atttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||||||||||| || || ||||| |||||||||| ||||| |||||| |||||||||| |
|
|
| T |
18371421 |
ctttctttccacctccaaggggaattgtgagtgtctttctaacttctcaaaggttcaaagggattcaagcttcgggcatagaaaagaaaaattcaaggt |
18371519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 487 - 754
Target Start/End: Original strand, 25897264 - 25897535
Alignment:
| Q |
487 |
taacattcttgagtctcccaacctctctctccacttgattttcagattaaac-cttttttctaatgatttttgtggactttgaatcatagattgcaagag |
585 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||| | |||||||||||| |||||||||| |||||||||| ||||| ||||||| ||| | | |
|
|
| T |
25897264 |
taacattctagagtctccaaacttctctctccacttgttcttcagattaaacatttttttctaagattttttgtggattttgagtcatagactgccatgg |
25897363 |
T |
|
| Q |
586 |
tgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaagg--aaaagagggatttctttccacctccaatgaaaatt |
683 |
Q |
| |
|
|| |||| | |||||| |||| |||| |||||| || ||| ||| | ||||||| | ||||| ||||||| ||||| ||||||| ||||| | |||| |
|
|
| T |
25897364 |
tgctatagggattgtatattgatttcattcaaggaacttggttgggaatcaagggttcaaaggtaaaaagagtgatttatttccacttccaaggtgaatt |
25897463 |
T |
|
| Q |
684 |
gtgagggtctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||| |||||||||||| |||||||| || || |||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
25897464 |
gtgggggtctttctaatcttctcaagttcaaagggatccaagctccggacattgcaaagaagagttcaaggt |
25897535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 16374583 - 16374495
Alignment:
| Q |
291 |
ttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatactta |
379 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || || ||||||| | |||| ||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
16374583 |
ttgattcgattcaaatattgcttgaatcgtataaaccttcatagctccaaatttgtccatttacacatgtttgaattgaatcatactta |
16374495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 494 - 648
Target Start/End: Original strand, 27488146 - 27488299
Alignment:
| Q |
494 |
cttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatat |
593 |
Q |
| |
|
||||||||| | ||||||| |||||||||| | | ||||||||| |||| || | || |||||||| | ||| ||||| ||||| |||||| |||| |
|
|
| T |
27488146 |
cttgagtcttcaaacctctgtctccacttgttcattagattaaacactttt-cttagaatctttgtggattgtgagtcataaattgctagagtgctatag |
27488244 |
T |
|
| Q |
594 |
gaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaagg |
648 |
Q |
| |
|
| |||||| |||| ||||||||||| || ||||||| | ||||||| || ||||| |
|
|
| T |
27488245 |
ggattgtaaattggtttctttcaaggaacttgattgggaatcaagggtccaaagg |
27488299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 30615104 - 30615149
Alignment:
| Q |
292 |
tgattcgattcaaatgttccttgaatcgtatcaatctgcatagcta |
337 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| || |||||||| |
|
|
| T |
30615104 |
tgattcgattcaaatattgcttgaatcgtatcaaccttcatagcta |
30615149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 4e-74; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 346 - 754
Target Start/End: Original strand, 22903501 - 22903911
Alignment:
| Q |
346 |
tcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagata |
444 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||| |||||| | || ||| |
|
|
| T |
22903501 |
tcctttttcatgtgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgtttttgccacaaaaattgcacttgtcagtcatgtatatatata |
22903600 |
T |
|
| Q |
445 |
gctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttt |
544 |
Q |
| |
|
| ||||| ||||||||||||||||| | ||| ||| | ||||| ||||| |||||||| |||||||||||||||||| | || ||||||||| |||| |
|
|
| T |
22903601 |
gttatactaatacaccttccaacttatttaatcaattgcaaataatattctagagtctccaaacctctctctccacttgttcttgagattaaacactttt |
22903700 |
T |
|
| Q |
545 |
tctaatga--tttttgtggactttgaatcatagattgcaagagtgatatatgaattgtaga-ttgttttctttcaagaaatttgattgaggatcaaggtt |
641 |
Q |
| |
|
||||| || |||||||||| ||| | ||||||||||| |||||| |||| |||||||| | | |||| ||| ||| || ||||||||||||||||| | |
|
|
| T |
22903701 |
tctaa-gatttttttgtggatttttagtcatagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggat |
22903799 |
T |
|
| Q |
642 |
ctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaag |
741 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || | |||||||| ||| ||||||||||| |||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
22903800 |
ctaaaggacaagagggatttctttccacctcgaagggaaattgtg-ggggctttctaacttttcaagtttaaggggatccaaatttcaaacatagaaaat |
22903898 |
T |
|
| Q |
742 |
aagaattcaaggt |
754 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22903899 |
aagaattcaaggt |
22903911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 346 - 754
Target Start/End: Original strand, 22885543 - 22885955
Alignment:
| Q |
346 |
tcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagata |
444 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||| || |||||| | | ||| |
|
|
| T |
22885543 |
tcctttttcatgtgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgtttttgccacaaaaattgcacttggcattcatgtatatgtata |
22885642 |
T |
|
| Q |
445 |
gctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttt |
544 |
Q |
| |
|
| ||||| |||||||||||||||||| | ||| ||| | ||||| ||||| |||||||| |||||| ||||||||||| | || ||||||||| |||| |
|
|
| T |
22885643 |
gttatactcatacaccttccaacttatttaatcaattgcaaataatattctagagtctccaaacctcgctctccacttgttcttgagattaaacactttt |
22885742 |
T |
|
| Q |
545 |
tctaa--tgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagatt-gttttctttcaagaaatttgattgaggatcaaggtt |
641 |
Q |
| |
|
||||| | |||||||||| ||| | ||||||||||| |||||| |||| |||||||| | | |||| ||| ||| || ||||||||||||||||| | |
|
|
| T |
22885743 |
tctaagattttttttgtggatttttagtcatagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggat |
22885842 |
T |
|
| Q |
642 |
ctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaag |
741 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || | ||||||| ||||||||||||||| |||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
22885843 |
ctaaaggacaagagggatttctttccacctcgaaggggaattgtgggggtctttctaacttttcaagtttaaggggatccaaactttaaacatagaaaat |
22885942 |
T |
|
| Q |
742 |
aagaattcaaggt |
754 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
22885943 |
aagaatttaaggt |
22885955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 358 - 751
Target Start/End: Original strand, 22918358 - 22918758
Alignment:
| Q |
358 |
tgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttgccactaatattgcacttatcactcatgtctgtagatagctatacccatac |
457 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| |||||||||||||||| || ||||||||| ||| |||||| | || ||| ||||| | ||| |
|
|
| T |
22918358 |
tgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgttttgccacaaaaattgcacttgtcagtcatgtatatatatatttatactcgtac |
22918457 |
T |
|
| Q |
458 |
accttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgattttt |
557 |
Q |
| |
|
||||||||||| | | ||| ||| | ||||| ||||| |||||||| |||||||||||||||||| | || ||||||||| ||||||||| ||||| |
|
|
| T |
22918458 |
accttccaactcatttaatcaattgcaaataatattctagagtctccaaacctctctctccacttgttcttgagattaaacactttttctaagatttttt |
22918557 |
T |
|
| Q |
558 |
gtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttc-------taaaggaa |
650 |
Q |
| |
|
||||| ||| | ||||||||||| |||||| |||| |||||||| | | ||| ||||||| | ||||||||||||||||| || ||||||| |
|
|
| T |
22918558 |
gtggatttttagtcatagattgctagagtgttataggaattgtacactagtttatttcaagtaccttgattgaggatcaaggatcaaggacataaaggac |
22918657 |
T |
|
| Q |
651 |
aagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattca |
750 |
Q |
| |
|
|||||||||||||||||||||| || | |||| || | ||||||||||||| |||| ||||||||||||||| |||| |||||| ||| ||||||||| |
|
|
| T |
22918658 |
aagagggatttctttccacctcgaaggggaattatgggagtctttctaacttttcaagtttaaggggatccaaacttcaaacatagaaaataagaattca |
22918757 |
T |
|
| Q |
751 |
a |
751 |
Q |
| |
|
| |
|
|
| T |
22918758 |
a |
22918758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 506 - 675
Target Start/End: Complemental strand, 18561688 - 18561518
Alignment:
| Q |
506 |
aacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagatt |
605 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||||||| | ||| |||| ||||| ||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
18561688 |
aacctctctctccacttgttcttcagattaaatattttttctaaaattctttttggattttgagtcatagattgctagagtgttatatgaattgtatatt |
18561589 |
T |
|
| Q |
606 |
gttttctttcaagaaatttgattgaggatcaaggttctaaa-ggaaaagagggatttctttccacctccaa |
675 |
Q |
| |
|
| |||| |||||| |||||| ||| | ||||||| || ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
18561588 |
ggtttcattcaaggaatttggttgggaatcaagggtccaaagggaaaagagtgatttctttccacctccaa |
18561518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 563 - 675
Target Start/End: Original strand, 25927770 - 25927883
Alignment:
| Q |
563 |
ctttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggattt |
661 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| | |||||| |||| || |||||||| | ||||||||| ||||||| ||||||| ||| ||| |||| |
|
|
| T |
25927770 |
ctttgagtcatagattgctagagtgatatagggattgtaaattgattgctttcaaggatattgattgagtatcaaggatctaaagtgaattgagtaattt |
25927869 |
T |
|
| Q |
662 |
ctttccacctccaa |
675 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
25927870 |
cattccacctccaa |
25927883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 555 - 675
Target Start/End: Complemental strand, 23143476 - 23143356
Alignment:
| Q |
555 |
tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaaga |
654 |
Q |
| |
|
||||| || ||||| ||||| ||||| | ||| |||| |||||||| |||| ||||||||||| || |||||||||||| |||| || ||||||||||| |
|
|
| T |
23143476 |
tttgtagaatttgagtcatacattgctaaggtgctataggaattgtacattggtttctttcaaggaacttgattgaggataaaggctccaaaggaaaaga |
23143377 |
T |
|
| Q |
655 |
gggatttctttccacctccaa |
675 |
Q |
| |
|
| || | ||| ||||||||| |
|
|
| T |
23143376 |
agaatcttttttcacctccaa |
23143356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 618
Target Start/End: Complemental strand, 24005841 - 24005749
Alignment:
| Q |
527 |
ttcagattaaaccttttttctaatgatttttgtggacttt-gaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaag |
618 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| |||| | | ||||||||| |||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
24005841 |
ttcagattaaacactttttctaagaatttttgtggtcttttgtgttatagattgctagagtgctatatgaattgtaagttgatttctttcaag |
24005749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 500 - 578
Target Start/End: Complemental strand, 22728589 - 22728511
Alignment:
| Q |
500 |
tctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagatt |
578 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||||| ||||||||| || |||||| ||||| ||||||||| |
|
|
| T |
22728589 |
tctccaaacctctctctacacttgtttttcagattaaacactttttctaagaatcattgtggtgtttgagtcatagatt |
22728511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 26546014 - 26546086
Alignment:
| Q |
164 |
tatgttaggatatcaacaaaaacatcattaaa-acctca--acaaattttgtctaatgttgattgattgaatc |
233 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| | |||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
26546014 |
tatgttaggatatcaacagaaacatcataaaagaactcaagacaaattttgtttaaaattgattgattgaatc |
26546086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 138; Significance: 1e-71; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 346 - 754
Target Start/End: Original strand, 9060 - 9471
Alignment:
| Q |
346 |
tcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagata |
444 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||| |||||| | || ||| |
|
|
| T |
9060 |
tcctttttcatgtgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgtttttgccacaaaaattgcacttgtcagtcatgtatatatata |
9159 |
T |
|
| Q |
445 |
gctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttt |
544 |
Q |
| |
|
| ||||| ||||||||||||||||| | ||| ||| | ||||| ||||| |||||||| |||||| ||||||||||| | || ||||||||| |||| |
|
|
| T |
9160 |
gttatactaatacaccttccaacttatttaatcaattgcaaataatattctagagtctccaaacctcgctctccacttgttcttgagattaaacactttt |
9259 |
T |
|
| Q |
545 |
tctaatgattttt--gtggactttgaatcatagattgcaagagtgatatatgaattgtagatt-gttttctttcaagaaatttgattgaggatcaaggtt |
641 |
Q |
| |
|
||||| ||||||| ||||| ||| | ||||||||||| |||||| |||| |||||||| | | |||| ||| ||| || ||||||||||||||||| | |
|
|
| T |
9260 |
tctaa-gatttttttgtggatttttagtcatagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggat |
9358 |
T |
|
| Q |
642 |
ctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaag |
741 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || | ||||||| ||||||||||||||| |||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
9359 |
ctaaaggacaagagggatttctttccacctcgaaggggaattgtgggggtctttctaacttttcaagtttaaggggatccaaactttaaacatagaaaat |
9458 |
T |
|
| Q |
742 |
aagaattcaaggt |
754 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
9459 |
aagaatttaaggt |
9471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 6e-64; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 291 - 754
Target Start/End: Original strand, 14800274 - 14800730
Alignment:
| Q |
291 |
ttgattcgattcaaatgttccttgaatcgta-tcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcg |
389 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||| | ||| |||||||||||||| ||| |||||| | |||||| |
|
|
| T |
14800274 |
ttgattcgattcaaatgttctttgaatcgtaatcaatctttatagcttcatgtttgccctttttcacatgtttga---------tacttagtatgattca |
14800364 |
T |
|
| Q |
390 |
aatcaagtagttgttttg-ccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaata |
488 |
Q |
| |
|
||||||| |||||||| |||| || |||||||||| ||| ||||| |||| |||| ||||||||||||||||||||| ||||||| ||| | |||| |
|
|
| T |
14800365 |
aatcaagctgttgttttttccacaaaaattgcacttaccacccatgtatgtatatagatatacccatacaccttccaaccaactgaatcaattgcaaata |
14800464 |
T |
|
| Q |
489 |
acattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtga |
588 |
Q |
| |
|
||||| |||||||| ||||| |||||| | ||| | || ||||||||| |||||| ||| ||| |||||||| ||||| ||||||||| | |||||| |
|
|
| T |
14800465 |
ttattctagagtctccaaacctttctctctatttgttcttgagattaaacatttttt-taa-gatctttgtggattttgagtcatagatttctagagtgc |
14800562 |
T |
|
| Q |
589 |
tatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgag |
688 |
Q |
| |
|
|| |||| ||||| |||| ||||||||||| || |||||||||| | || |||||| ||||||||||||| ||||||||| ||| | ||||||| | |
|
|
| T |
14800563 |
tacatgagttgtacattggtttctttcaaggaacttgattgagggttaaaagtctaaaataaaagagggatttgtttccaccttcaaagtgaattgtggg |
14800662 |
T |
|
| Q |
689 |
ggtctttctaacttctc--aaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14800663 |
ggtctttctaacttctcagaagttaaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
14800730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 557 - 754
Target Start/End: Original strand, 8363684 - 8363881
Alignment:
| Q |
557 |
tgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagg |
656 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| |||||| |||||| |||| ||||||||||| || ||| ||||||| |||| || ||| ||||||||| |
|
|
| T |
8363684 |
tgtggattttgagtcatagattgctagagtactatatgtattgtatattggtttctttcaaggaacttggttgaggacgaagggtccaaacgaaaagagg |
8363783 |
T |
|
| Q |
657 |
gatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||||||||||||||||||| | | ||||| ||||||||||||||| |||| || |||||||||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
8363784 |
gatttctttccacctccaaagtgacttgtgggggtctttctaacttttcaagttcaaggggatccaagctttggatatagcaaagaaggattcaaggt |
8363881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 20820466 - 20820417
Alignment:
| Q |
17 |
taatatggtcatggttagcaccgatctaattaagataagggatgtgtact |
66 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20820466 |
taataaggtcatggttagcaccgatctaattaagataagggatgtgtact |
20820417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 8363492 - 8363596
Alignment:
| Q |
413 |
aatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctct |
512 |
Q |
| |
|
|||||||| |||||||||| || || || |||| |||||||||||||||| ||||| ||||||| ||| | ||||||||||| |||||| | ||||||| |
|
|
| T |
8363492 |
aatattgctcttatcactcctgcctatatatagttatacccatacacctttcaactaactgaatcaattgccaataacattctagagtcttcaaacctct |
8363591 |
T |
|
| Q |
513 |
ctctc |
517 |
Q |
| |
|
||||| |
|
|
| T |
8363592 |
ctctc |
8363596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 497 - 675
Target Start/End: Complemental strand, 15486363 - 15486184
Alignment:
| Q |
497 |
gagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaa |
596 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||| |||||||||| || |||||| |||||| ||||||||| | ||| || |||| | | |
|
|
| T |
15486363 |
gagtctccaaacctctatctccacttgatcttcagattaaactctttttctaataatcattgtggtctttgagtcatagatttctagattgttataggta |
15486264 |
T |
|
| Q |
597 |
ttgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggatttctttccacctccaa |
675 |
Q |
| |
|
||||| ||| || |||| ||| | ||| ||| | |||||| || |||| ||| |||| ||||||||||||||||||| |
|
|
| T |
15486263 |
ttgtaagttgattgcttttaaggatcttggttgggaatcaagaatccaaagtgaatagagtgatttctttccacctccaa |
15486184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 485 - 752
Target Start/End: Original strand, 26883177 - 26883448
Alignment:
| Q |
485 |
aataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaag |
583 |
Q |
| |
|
|||||||| || |||||||| |||||||||| ||||| | |||||||||||| |||| |||| |||| |||||||| ||||| ||||||||||| || |
|
|
| T |
26883177 |
aataacatactagagtctccaaacctctctc--cacttattattcagattaaacacttttcctaa-gattctttgtggattttgagtcatagattgctag |
26883273 |
T |
|
| Q |
584 |
agtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaatt |
683 |
Q |
| |
|
||| |||| | | ||| ||| ||||||||||| | ||| || | ||||||| || |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
26883274 |
ggtgttatagggactgtgtattagtttctttcaaggatcttggttaggaatcaaggatccaaagaaaaagagggatttctttccacctccaagatgaatt |
26883373 |
T |
|
| Q |
684 |
gtga-----gggtctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaag |
752 |
Q |
| |
|
| | |||| ||||||| ||| |||| || | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26883374 |
gcggtgcaggggtttttctaatcttttcaagttccatgggatccaagcttcagacatagcaaagaagaattcaag |
26883448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 682 - 754
Target Start/End: Original strand, 27173855 - 27173927
Alignment:
| Q |
682 |
ttgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
||||| || ||||||||||||||||| || |||||||||||||||||| ||| | ||||||| || ||||||| |
|
|
| T |
27173855 |
ttgtggggatctttctaacttctcaagttcaaggggatccaagcttcgaacacaacaaagaaaaactcaaggt |
27173927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 549
Target Start/End: Original strand, 17546549 - 17546681
Alignment:
| Q |
417 |
ttgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctct |
516 |
Q |
| |
|
|||||||||| || | || || || ||||||||| |||||| ||||||| |||| ||| ||| | | ||||||||| |||||||| ||||||||| | |
|
|
| T |
17546549 |
ttgcacttatgacccctgcctatatatagctataaccataccacttccaaactactaaatcaattgcaagtaacattctagagtctccaaacctctctat |
17546648 |
T |
|
| Q |
517 |
ccacttgattttcagattaaaccttttttctaa |
549 |
Q |
| |
|
||| ||| | |||||||||||| ||||||||| |
|
|
| T |
17546649 |
ccatttgttcttcagattaaacactttttctaa |
17546681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 3664881 - 3664835
Alignment:
| Q |
172 |
gatatcaacaaaaacatcattaaaac-ctcaacaaattttgtctaat |
217 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
3664881 |
gatatcaacaaaaatatcattaaaaaactcaacaaattttgtctaat |
3664835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 453 - 751
Target Start/End: Complemental strand, 18896161 - 18895865
Alignment:
| Q |
453 |
catacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatga |
552 |
Q |
| |
|
|||||| ||||||||||||||||| ||| | |||| |||| | |||||||| |||||||||| || ||| | || | ||||||| ||||||||| || |
|
|
| T |
18896161 |
catacaacttccaacttactgaatcaattgcaaatatcattttagagtctccaaacctctctc--catttgttcttgatattaaacactttttctaa-ga |
18896065 |
T |
|
| Q |
553 |
tttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaa |
652 |
Q |
| |
|
| |||||||| ||||| ||||||||||| |||||| |||| || |||| |||| ||||||||||| || ||||||||||||||||| |||||| ||||| |
|
|
| T |
18896064 |
tctttgtggattttgagtcatagattgctagagtgctataggagttgtgcattggtttctttcaaggaacttgattgaggatcaagggtctaaatgaaaa |
18895965 |
T |
|
| Q |
653 |
gagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaa--atttaaggggatccaagcttcggacatagcaaagaagaattca |
750 |
Q |
| |
|
||| |||||||||||||||||| | || |||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
18895964 |
aaggtatttctttccacctccaaggggaagtgtg-gggtctttctaacttctcaaagatttaaggggatccaagcttccgacatatcaaagaagaattca |
18895866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 506 - 745
Target Start/End: Complemental strand, 14459189 - 14458950
Alignment:
| Q |
506 |
aacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagatt |
605 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||| ||||||||| |||||||||| ||||| ||||||||||| |||||| |||| | || ||||||| |
|
|
| T |
14459189 |
aacctctatctccacttgatcttcagagtaaacactttttctaagaatttttgtggtttttgagtcatagattgctagagtgctatagggatagtagatt |
14459090 |
T |
|
| Q |
606 |
gttttctttcaagaaatttgattgaggatcaaggttctaaagg-aaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaa-cttc |
703 |
Q |
| |
|
| ||||| ||||| || || || | ||||||| || ||||| |||| || |||||||||||||||| || | |||||| | || ||||| ||| |||| |
|
|
| T |
14459089 |
ggtttctctcaaggaacttcatcaggaatcaagggtccaaaggaaaaatagtgatttctttccacctctaa-ggaaattg-ggggttctttataatcttc |
14458992 |
T |
|
| Q |
704 |
tcaaatttaaggggatccaagcttcggacatagcaaagaaga |
745 |
Q |
| |
|
|||| || ||||||||| ||||| | |||||||||||||||| |
|
|
| T |
14458991 |
tcaagttcaaggggatctaagctccagacatagcaaagaaga |
14458950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 493 - 745
Target Start/End: Original strand, 17773938 - 17774188
Alignment:
| Q |
493 |
tcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatata |
592 |
Q |
| |
|
|||||||||| | | ||||||| |||||| | | ||||||||||| ||||||||| || ||||||| |||||| ||||||||||| |||||| ||| |
|
|
| T |
17773938 |
tcttgagtcttcaagcctctctttccactagttcttcagattaaattatttttctaagaatctttgtggtctttgagtcatagattgctagagtgctatg |
17774037 |
T |
|
| Q |
593 |
tgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggatttctttccacctccaatgaaaattgtgagggt |
691 |
Q |
| |
|
|| |||||| |||| |||| |||||| || ||||||| | ||||||| || |||| ||| |||| ||||| |||||||||| | | |||| | || | |
|
|
| T |
17774038 |
tggattgtatattggtttcattcaaggaacttgattgggaatcaagggtccaaagagaatagagtgatttatttccacctctaggg---attgag-ggtt |
17774133 |
T |
|
| Q |
692 |
ctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaaga |
745 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||||||| || ||||||||||||||| |
|
|
| T |
17774134 |
ctttataatcttctcaagttcaaggggatccaagctccgaacatagcaaagaaga |
17774188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 341 - 476
Target Start/End: Original strand, 42378505 - 42378641
Alignment:
| Q |
341 |
atttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgt-tttgccactaatattgcacttatcactcatgtctgt |
439 |
Q |
| |
|
|||||||| ||| ||||||||||| | |||||||||||| | | | |||||||| || ||||| |||| | ||||||| ||||||||||| || |||| |
|
|
| T |
42378505 |
atttatccatttacacatgtctgagtcgaatcatacttactctaaatcgaatcatgtcgttgtgtttgtctaaaatattgaacttatcactcctgcctgt |
42378604 |
T |
|
| Q |
440 |
agatagctatacccatacaccttccaacttactgaat |
476 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
42378605 |
atataactatacccatacaccttccaactcactgaat |
42378641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 485 - 614
Target Start/End: Complemental strand, 30989165 - 30989036
Alignment:
| Q |
485 |
aataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaag |
583 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |||| | |||||||||||| |||||||||| |||| |||||| | || || ||||| ||| | || |
|
|
| T |
30989165 |
aataacattctagagtctccaaacctctctctcctcttgttcttcagattaaacattttttctaa-gattctttgtgcatttagagtcatatatttctag |
30989067 |
T |
|
| Q |
584 |
agtgatatatgaattgtagattgttttcttt |
614 |
Q |
| |
|
||| |||| |||||||| |||| ||||||| |
|
|
| T |
30989066 |
agtactataggaattgtatattggtttcttt |
30989036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 647 - 751
Target Start/End: Complemental strand, 30985601 - 30985496
Alignment:
| Q |
647 |
ggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaaga |
745 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||| || ||||||||||| |||||| | || || ||||||||| ||||| |||| | |||||||| |
|
|
| T |
30985601 |
ggaaaagaggaatttctttccacctccaaggtgaattgggaaggtctttctaatcttctcgagttcaatgggatccaaacttcgaacattgaaaagaaga |
30985502 |
T |
|
| Q |
746 |
attcaa |
751 |
Q |
| |
|
|||||| |
|
|
| T |
30985501 |
attcaa |
30985496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 606
Target Start/End: Complemental strand, 22095459 - 22095385
Alignment:
| Q |
532 |
attaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattg |
606 |
Q |
| |
|
||||||| |||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22095459 |
attaaacattttttctaagaatctttgtggtttttgagtcatagattggcagagtgatatatgaattgtagattg |
22095385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 617
Target Start/End: Complemental strand, 23511095 - 23511005
Alignment:
| Q |
527 |
ttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaa |
617 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||| |||||| ||||||||||| |||||| |||| | |||| | ||| |||||||||| |
|
|
| T |
23511095 |
ttcagattaaacactttttctaataattattgtggtctttgattcatagattgctagagtgctatagggattgaaagttgatttctttcaa |
23511005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 652
Target Start/End: Original strand, 27237108 - 27237163
Alignment:
| Q |
597 |
ttgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaa |
652 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||||||||| |||||| ||||| |
|
|
| T |
27237108 |
ttgtacattggtttctttcaaggaacttgattgaggatcaagggtctaaacgaaaa |
27237163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 530 - 648
Target Start/End: Complemental strand, 22586738 - 22586621
Alignment:
| Q |
530 |
agattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattg |
629 |
Q |
| |
|
||||||||| ||||||||| ||| ||||| || ||||| ||||||||| | ||| |||| || ||||| || | ||||||||||| || ||||||| |
|
|
| T |
22586738 |
agattaaacactttttctaa-gatctttgtagaatttgaggcatagattggtacggtgctataagagttgtacatcggtttctttcaaggaacttgattg |
22586640 |
T |
|
| Q |
630 |
aggatcaaggttctaaagg |
648 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
22586639 |
aggatcaagggtctaaagg |
22586621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 42603458 - 42603519
Alignment:
| Q |
171 |
ggatatcaacaaaaacatcattaaaac--ctcaacaaattttgtctaatgttgattgattga |
230 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
42603458 |
ggataacaacaaaatcatcattaaaataactcaacaaattatgtctaatgttgagtgattga |
42603519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 267 - 448
Target Start/End: Original strand, 24803024 - 24803206
Alignment:
| Q |
267 |
tatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaat |
366 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||||||| || ||||||||||||||||| ||||||| | |||||||| ||||||||||| ||||| |
|
|
| T |
24803024 |
tatcaatcttcatctagaaaccacttgattcgattcaaatattagttgaatcgtatcaatcttcatagctccatatttatcccttttcacatgtttgaat |
24803123 |
T |
|
| Q |
367 |
tgaatcatacttaatgtgattcgaatcaagtagttgtt-ttgccactaatattgcacttatcactcatgtctgtagatagcta |
448 |
Q |
| |
|
||| || | || ||||||| |||||| || |||||| ||||||| ||||| ||||||||||||| ||| | || ||||||| |
|
|
| T |
24803124 |
caaattattcgtagtgtgatttgaatcatgtcgttgttgttgccacaaatatcgcacttatcactcttgtatatatatagcta |
24803206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 509 - 754
Target Start/End: Original strand, 30074006 - 30074251
Alignment:
| Q |
509 |
ctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgtt |
608 |
Q |
| |
|
||||||||||||||| | |||| ||||||| ||||||||| || ||||||| ||||| ||||||||||| ||||| ||| | ||||||||||| | |
|
|
| T |
30074006 |
ctctctctccacttgttcttcatattaaacactttttctaagaatctttgtggtttttgagtcatagattgctagagttctattgggattgtagattggt |
30074105 |
T |
|
| Q |
609 |
ttctttcaagaaatttgattgaggatcaaggttctaaagg-aaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaa-cttctca |
706 |
Q |
| |
|
|||||||||| || ||||||| ||||||| || ||||| ||||||| ||||||||||||||||||| | ||||| | || ||||| ||| ||||||| |
|
|
| T |
30074106 |
ttctttcaaggaaattgattggaaatcaagggtccaaaggaaaaagagtgatttctttccacctccaa-gggaattg-ggggttctttataatcttctca |
30074203 |
T |
|
| Q |
707 |
aatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
754 |
Q |
| |
|
| || || ||||||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
30074204 |
agttcaaatggatccaagcttcagacatagcaaagaagagttcgaggt |
30074251 |
T |
|
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Target: scaffold0004 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 291 - 675
Target Start/End: Original strand, 225107 - 225491
Alignment:
| Q |
291 |
ttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcct-ttttcacatgtctgaattgaatcatacttaatgtgattcg |
389 |
Q |
| |
|
||||||| ||||| | ||| |||||| |||||||||| ||||||| | |||| |||| |||||| ||||||||| || |||||||||||||| |||| |
|
|
| T |
225107 |
ttgattcaattcaggtattctttgaattgtatcaatcttcatagcttcatattt-tcctattttcaagtgtctgaatcgattcatacttaatgtggttcg |
225205 |
T |
|
| Q |
390 |
aatcaagtagtt-gttttgccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaat-atattactaat |
487 |
Q |
| |
|
||||| || ||| ||||||||||||| |||||||| ||||||||||| || |||||| | || ||||||| |||||||| ||| | || | ||| |
|
|
| T |
225206 |
aatcaggtcgttatttttgccactaattttgcactttccactcatgtctatatatagcttctcacactcaccttctaacttactaaatcaatttgcaaat |
225305 |
T |
|
| Q |
488 |
aacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtg |
587 |
Q |
| |
|
| || | |||||||||| | |||||||||| ||||| | || ||||||||| ||||| | | ||| ||||| || ||||| |||||||||| ||||| |
|
|
| T |
225306 |
atcacttttgagtctccaatcctctctctctacttgttcttgagattaaacactttttttga-gatctttgtagaatttgaggcatagattgctagagt- |
225403 |
T |
|
| Q |
588 |
atatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaa |
675 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| | ||||||||||||||| | |||||||||||||| ||| | ||| ||||||||| |
|
|
| T |
225404 |
ctataggctttgtacattggtttctttcaaggatcttgattgaggatcaatggtctaaaggaaaagaaagatctattttcacctccaa |
225491 |
T |
|
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