View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1910_low_10 (Length: 556)

Name: NF1910_low_10
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1910_low_10
NF1910_low_10
[»] chr7 (6 HSPs)
chr7 (12-541)||(26975204-26975727)
chr7 (131-181)||(40561719-40561769)
chr7 (129-181)||(27571936-27571988)
chr7 (195-235)||(36797169-36797209)
chr7 (129-181)||(40491652-40491704)
chr7 (129-181)||(45557439-45557491)
[»] chr1 (8 HSPs)
chr1 (129-181)||(34915140-34915192)
chr1 (131-181)||(48548975-48549025)
chr1 (131-180)||(44786879-44786928)
chr1 (129-181)||(35961442-35961494)
chr1 (146-181)||(24697574-24697609)
chr1 (129-181)||(441594-441646)
chr1 (129-181)||(5268293-5268345)
chr1 (129-165)||(29759709-29759745)
[»] chr8 (2 HSPs)
chr8 (129-180)||(16972023-16972074)
chr8 (129-181)||(18123300-18123352)
[»] chr6 (7 HSPs)
chr6 (131-181)||(32888918-32888968)
chr6 (131-181)||(34620960-34621010)
chr6 (131-181)||(34748397-34748447)
chr6 (132-181)||(1499974-1500023)
chr6 (131-181)||(882760-882810)
chr6 (129-179)||(25208702-25208752)
chr6 (184-236)||(13687258-13687310)
[»] chr5 (4 HSPs)
chr5 (129-181)||(117455-117507)
chr5 (129-163)||(24036623-24036657)
chr5 (134-180)||(34443050-34443096)
chr5 (131-176)||(4306591-4306636)
[»] chr2 (3 HSPs)
chr2 (129-181)||(44439328-44439380)
chr2 (129-181)||(15220820-15220872)
chr2 (129-181)||(16518852-16518904)
[»] chr4 (1 HSPs)
chr4 (129-177)||(22683942-22683990)
[»] chr3 (1 HSPs)
chr3 (131-163)||(47278799-47278831)


Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Original strand, 26975204 - 26975727
Alignment:
Q  12 agagaagaaaaatactagaaatcttagtttgatacatagtataagttacacacactcaaacttgatttcgaaaaaatgtttgggtgtgacctgcaaaagc 111  Q
    |||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  26975204 agagaataaaaatactagaaatcttagtttgatacata---taagttacacacactcaaacttgatttcgaaaaaatgtttgggtgtgatctgcgaaagc 26975300  T
Q  112 tgattttagttataagtagtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgagacaaattttaatgtaaaaatcagatttaga 211  Q
    |||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975301 tgattttagttataagt---gagttgaatgtaaaatgatttatgtttgaatacgtttatgtaaaagtgagacaaattttaatgtaaaaatcagatttaga 26975397  T
Q  212 gataaaaactacaaatcataacttcaatttaaaatcaattatacttgaacacgttcaaacgcatcaaaagcaattctacatatccataatcaattttaac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975398 gataaaaactacaaatcataacttcaatttaaaatcaattatacttgaacacgttcaaacgcatcaaaagcaattctacatatccataatcaattttaac 26975497  T
Q  312 tcatgatcaacggtgaaatcaaacacacttagtggatgtttgggttcgtggagcgatggttagaattacgatgaaccatcacaattttgacaaaaactac 411  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975498 tcatgatcaacagtgaaatcaaacacacttagtggatgtttgggttcgtggagcgatggttagaattacgatgaaccatcacaattttgacaaaaactac 26975597  T
Q  412 actcacaagttacaacttcaacaaatatttgtgattttgtcaaactgatgacaaatccaaacatatataattagtatcgtttttcccaaagatcatcttt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26975598 actcacaagttacaacttcaacaaatatttgtgattttgtcaaactgatgacaaatccaaacatatataattagtatcgtttttcccaaagatcatcttt 26975697  T
Q  512 ggtttctagtctttaaactcatttgaaact 541  Q
    ||||||||||||||||||||||||||||||    
T  26975698 ggtttctagtctttaaactcatttgaaact 26975727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 40561719 - 40561769
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||| ||||| ||||||||||||| |||| || |||||||||||||    
T  40561719 tgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgag 40561769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 27571988 - 27571936
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    |||||||| || ||||||||||||||| ||| |||| |||||||||| |||||    
T  27571988 agtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgag 27571936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 36797169 - 36797209
Alignment:
Q  195 taaaaatcagatttagagataaaaactacaaatcataactt 235  Q
    ||||||||| |||| |||||||||||||||||| |||||||    
T  36797169 taaaaatcacattttgagataaaaactacaaattataactt 36797209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 40491704 - 40491652
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||||| ||||| |||||||| |||| |||| || |||||||||||||    
T  40491704 agtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgag 40491652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 45557491 - 45557439
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||||| ||||| |||||| |||||| |||| || |||||||||||||    
T  45557491 agtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgag 45557439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 34915192 - 34915140
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||| | |||||||||||||||||||||||| || |||||||||||||    
T  34915192 agtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgag 34915140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 48548975 - 48549025
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  48548975 tgagttgaaggtaaaatgatttatgttttgatacatttatgtaaaagtgag 48549025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 44786879 - 44786928
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 180  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||||||||    
T  44786879 tgagttgaatgtaaaatgatttatgttcgaatacattcatgtaaaagtga 44786928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 35961494 - 35961442
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||||| ||||||||||||||||||  |||| || |||||||||||||    
T  35961494 agtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgag 35961442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 24697574 - 24697609
Alignment:
Q  146 atgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    |||||||||||||| |||||||||||||||||||||    
T  24697574 atgatttatgtttggatacgtttatgtaaaagtgag 24697609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 441594 - 441646
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||| ||||| || ||||||||||||||||||||| ||||| ||||| ||||    
T  441594 agtgatttgaatgtgaaatgatttatgtttgaatacatttatataaaaatgag 441646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 5268345 - 5268293
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||||| ||||| |||||| ||||||||||  || |||||||||||||    
T  5268345 agtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtgag 5268293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 29759745 - 29759709
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacg 165  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  29759745 agtgagttgaatgtaaaatgatttatgtttggatacg 29759709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 16972023 - 16972074
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 180  Q
    ||||||||||| |||||||||||| ||||||||||| || ||||||||||||    
T  16972023 agtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtga 16972074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 18123352 - 18123300
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||| ||||| |||||||||||| |||| |||||  ||||||||||||||||    
T  18123352 agtgaattgaaggtaaaatgatttgtgttggaatatatttatgtaaaagtgag 18123300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 32888918 - 32888968
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    |||||||||  ||||||||||||||||||||||  ||||||||||||||||    
T  32888918 tgagttgaagataaaatgatttatgtttgaatatatttatgtaaaagtgag 32888968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 34621010 - 34620960
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgag 34620960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 34748447 - 34748397
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgag 34748397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 1500023 - 1499974
Alignment:
Q  132 gagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    |||||||  ||||| |||||||||||||||||| ||||||||||||||||    
T  1500023 gagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgag 1499974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 882810 - 882760
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||| ||||||||||||||||||| |||| || ||| |||||||||    
T  882810 tgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgag 882760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 25208752 - 25208702
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtg 179  Q
    ||||||||||| ||||||||||||||||||  |||  ||||||||||||||    
T  25208752 agtgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtg 25208702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 13687310 - 13687258
Alignment:
Q  184 aaattttaatgtaaaaatcagatttagagataaaaactacaaatcataacttc 236  Q
    |||||| ||||||||||||| ||||||||| ||||||| ||| || |||||||    
T  13687310 aaatttgaatgtaaaaatcatatttagagacaaaaacttcaagtcttaacttc 13687258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 117455 - 117507
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||||| ||||||||||| ||||||| |||| | ||||||||||||||    
T  117455 agtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgag 117507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 24036657 - 24036623
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaata 163  Q
    ||||||||||| |||||||||||||||||||||||    
T  24036657 agtgagttgaatgtaaaatgatttatgtttgaata 24036623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 34443096 - 34443050
Alignment:
Q  134 gttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtga 180  Q
    |||||| ||||||| |||||||||||||||| ||||| |||||||||    
T  34443096 gttgaaagtaaaataatttatgtttgaatacatttatataaaagtga 34443050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 4306636 - 4306591
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaa 176  Q
    ||||||||| ||||||||||||||||||| |||| || ||||||||    
T  4306636 tgagttgaatgtaaaatgatttatgtttggatacattcatgtaaaa 4306591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 44439380 - 44439328
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    |||||||| || ||||| ||||||||||||| ||| |||||||||||||||||    
T  44439380 agtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgag 44439328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 15220820 - 15220872
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||||| ||||| ||||||||||||| |||| || |||| ||||||||    
T  15220820 agtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgag 15220872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 16518904 - 16518852
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaagtgag 181  Q
    ||||||||||  |||||||||||| |||||| |||| || |||||||||||||    
T  16518904 agtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgag 16518852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 22683990 - 22683942
Alignment:
Q  129 agtgagttgaacgtaaaatgatttatgtttgaatacgtttatgtaaaag 177  Q
    ||||||||||| |||||||| |||||||||| | || ||||||||||||    
T  22683990 agtgagttgaaagtaaaatggtttatgtttggacacatttatgtaaaag 22683942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 47278831 - 47278799
Alignment:
Q  131 tgagttgaacgtaaaatgatttatgtttgaata 163  Q
    ||||||||| |||||||||||||||||||||||    
T  47278831 tgagttgaatgtaaaatgatttatgtttgaata 47278799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University