View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_11 (Length: 552)
Name: NF1910_low_11
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 102 - 531
Target Start/End: Original strand, 1441286 - 1441715
Alignment:
| Q |
102 |
tatttcatgttattatgtgatgagtccttgcgcttcataagcaagataaatataaattaggaaaatagggactgagttacttccacaataatcagtggca |
201 |
Q |
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| T |
1441286 |
tatttcatgttattatgtgatgagtccttgcgcttcataagcaagataaatataaattaggaaaatagggaccgagttacttccacaataatcagtggca |
1441385 |
T |
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| Q |
202 |
cattaaaaactatcatcaaaccatcacaaaaataaaacccagatcataaaaattgatcattaggaaactctgttgctataataagaataattacttttca |
301 |
Q |
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| T |
1441386 |
cattaaaaactatcatcaaaccatcacaaaaataaaacccacatcatgaaaattgatcattaggaaactctgttgctataataagaataattacttttca |
1441485 |
T |
|
| Q |
302 |
gctttgttgacaagtttacaagcccaaaacttagagcaaccggaaatgtaacattcaatgctaagatttaacaatagcttaaaatatgcaggcgtgcaac |
401 |
Q |
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| T |
1441486 |
cctttgttgacaagttcacaagcccaaaacttagagcaaccggaaatgtaacattcaatgctaagatttaacaatagcttaaaatatgcaggcgtgcaac |
1441585 |
T |
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| Q |
402 |
atctgaaacatctcaaattctctttagttgttcattattaaacaaaaaataaagcatataacaatcatcctcacattcaggtagtcaaattaaggattaa |
501 |
Q |
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| T |
1441586 |
atctgaaacatctcaaattatctttagttgttcattattagacaaaaaataaagcatataacaatcatcctcacattcaggtagtcaaattaaggattaa |
1441685 |
T |
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| Q |
502 |
ttccataaactaacagacactgagtaacgt |
531 |
Q |
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| T |
1441686 |
ttccataaactaacagacactgagtaacgt |
1441715 |
T |
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