View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_16 (Length: 468)
Name: NF1910_low_16
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_16 |
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| [»] scaffold0005 (2 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 468
Target Start/End: Original strand, 224723 - 225177
Alignment:
| Q |
15 |
caaaaaggcctcgtatgcagaccaatgaactatttatctatgtagttctgacacttcatattaaagccaagattggcccgaaggtaaggccactaaagct |
114 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
224723 |
caaaaaggcctcgtatacagagcaatgaactatttatctatgtagttctgacacttcatattaaagccaagactggctcgaaggtaaggccactgaagct |
224822 |
T |
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| Q |
115 |
ctcgctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaaccttaaatatcaaaacttg |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
224823 |
ctcgctttaagcttaccaacaaaaaaattatttttcactaaattttaaaggcaaaaaggcctcgtatgcagatcaaagaagcctcaaatatcaaaacttg |
224922 |
T |
|
| Q |
215 |
ttttaggcctcactta-tttttgagattattggaccaaccctgttaaaagcatgtcgaacgtgttggtgtctaatattgacacgacaccagcgtacttaa |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
224923 |
ttttaggcctcacttactttttgagattattggaccaaccctgttaaaagcatgtcggacgtgttggtgtctaatattgacacgacaccagcacacttaa |
225022 |
T |
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| Q |
314 |
ttacattcaaatattttcttttaataaattattattggtattggcgtgttattgtcaatatagtgtccaatgtctgtgtatgtgtccgtgcaagtttttg |
413 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
225023 |
ttacattcaaatatcttcttttaataaattattattggtattggcgtgttattgtcaatatagtgtctaatgtctgcgtatgtgtccgtgcaagtttttg |
225122 |
T |
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| Q |
414 |
atgctataggtgaattgtattatgtagtacctgagacacaagctgaaacaaaatt |
468 |
Q |
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| T |
225123 |
atgctataggtgaattgtattatgtagtacctgagacacaagctgaaacaaaatt |
225177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 224861 - 224894
Alignment:
| Q |
2 |
taaattttaaaggcaaaaaggcctcgtatgcaga |
35 |
Q |
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| T |
224861 |
taaattttaaaggcaaaaaggcctcgtatgcaga |
224894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 468
Target Start/End: Complemental strand, 14592655 - 14592201
Alignment:
| Q |
15 |
caaaaaggcctcgtatgcagaccaatgaactatttatctatgtagttctgacacttcatattaaagccaagattggcccgaaggtaaggccactaaagct |
114 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
14592655 |
caaaaaggcctcgtatacagagcaatgaactatttatctatgtagttctgacacttcatattaaagccaagactggctcgaaggtaaggccactgaagct |
14592556 |
T |
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| Q |
115 |
ctcgctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaaccttaaatatcaaaacttg |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
14592555 |
ctcgctttaagcttaccaacaaaaaaattatttttcactaaattttaaaggcaaaaaggcctcgtatgcagatcaaagaagcctcaaatatcaaaacttg |
14592456 |
T |
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| Q |
215 |
ttttaggcctcactta-tttttgagattattggaccaaccctgttaaaagcatgtcgaacgtgttggtgtctaatattgacacgacaccagcgtacttaa |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
14592455 |
ttttaggcctcacttactttttgagattattggaccaaccctgttaaaagcatgtcggacgtgttggtgtctaatattgacacgacaccagcacacttaa |
14592356 |
T |
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| Q |
314 |
ttacattcaaatattttcttttaataaattattattggtattggcgtgttattgtcaatatagtgtccaatgtctgtgtatgtgtccgtgcaagtttttg |
413 |
Q |
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| T |
14592355 |
ttacattcaaatatcttcttttaataaattattattggtattggcgtgttattgtcaatatagtgtctaatgtctgcgtatgtgtccgtgcaagtttttg |
14592256 |
T |
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| Q |
414 |
atgctataggtgaattgtattatgtagtacctgagacacaagctgaaacaaaatt |
468 |
Q |
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| T |
14592255 |
atgctataggtgaattgtattatgtagtacctgagacacaagctgaaacaaaatt |
14592201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 41626267 - 41626353
Alignment:
| Q |
97 |
ggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgca |
184 |
Q |
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| T |
41626267 |
ggtaaggccactaaaactcttgttttaagcctaccaacaaaa-aaatatttttcattaaaatttataagttaaaagacctcgtatgca |
41626353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 14592517 - 14592484
Alignment:
| Q |
2 |
taaattttaaaggcaaaaaggcctcgtatgcaga |
35 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14592517 |
taaattttaaaggcaaaaaggcctcgtatgcaga |
14592484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 34304628 - 34304564
Alignment:
| Q |
97 |
ggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcactaaatttta |
161 |
Q |
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| T |
34304628 |
ggtaaggccactaaagccatcgctttaggcctaacaacaaaaatattatttttcattgaatttta |
34304564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 235
Target Start/End: Complemental strand, 9589854 - 9589716
Alignment:
| Q |
97 |
ggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaac |
196 |
Q |
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|||||||| |||||| | |||| |||| ||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||| || || || || | |
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| T |
9589854 |
ggtaaggctactaaaaccctcgttttaggcttaccaacataagaattatttttcattaaattttaaaggcaaaaagacctcatatacatacgaatgagat |
9589755 |
T |
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| Q |
197 |
cttaaatatcaaaacttgttttaggcctcacttattttt |
235 |
Q |
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| T |
9589754 |
ctcaaatattaaaacttgttttaagtcacacttattttt |
9589716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 15889059 - 15889207
Alignment:
| Q |
99 |
taaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaacct |
198 |
Q |
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| T |
15889059 |
taaggccactaaagccctcgctttaggcctacaagcaaaaatattatttttcattaaattttatatgcgaaaaggcctcatatgcagataaaaaaggcct |
15889158 |
T |
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| Q |
199 |
taaatatcaaaacttgttttaggcctcacttatttttg-agattattgg |
246 |
Q |
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| T |
15889159 |
catatgccaaaacttatttttggtctaacttatttttgaagattattgg |
15889207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 26308954 - 26309018
Alignment:
| Q |
97 |
ggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcactaaatttta |
161 |
Q |
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||||||||||| ||||| ||||||||| || |||| |||| |||||||||||| ||||||||| |
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| T |
26308954 |
ggtaaggccaccaaagccctcgctttaggccccccaaaaaaaaaattatttttcattaaatttta |
26309018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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