View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1910_low_18 (Length: 441)
Name: NF1910_low_18
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 42655587 - 42655998
Alignment:
| Q |
18 |
caaaacggaacgtgtaagtgtaacattacgtgcatgtttggattgacagataagtggactacaacgattttgacaaacgctacgaaaataacactgccac |
117 |
Q |
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| T |
42655587 |
caaaacggaacgtgtaagtgtaacattacgtgcatgtttggattgatagataagtggactacaacgattttgacaaacgctacgaaaataacactgccac |
42655686 |
T |
|
| Q |
118 |
tatgattttgccaaactctattccactttcaggaaatctgagtttagaaattaccttcatgaccaaactgtttgacttggtattctctgctattaatttg |
217 |
Q |
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| T |
42655687 |
tatgattttgccaaactctattccactttcaggaaaactgagtttagaaattaccttcatgaccaaactgtttgacttggtattctctgctattaatttg |
42655786 |
T |
|
| Q |
218 |
tgtataggaccaacaggaactttcttagtggccttaacttcatcttctaccgtttcctgatatattgcctaacataatatagtttacaatgattcaagaa |
317 |
Q |
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| T |
42655787 |
tgtataggaccaacaggaactttcttagtggccttaacttcatcttctaccgtttcctgatatattgcctaacataatatagtttacaatgattcaagaa |
42655886 |
T |
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| Q |
318 |
ttagcagatgaaaattcaaatagaactagcaagtagaaacaaacatgaattgaataggctaatattgctttgaattatgatttccttacctcagatcctc |
417 |
Q |
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| T |
42655887 |
ttagcagatgaaaattcaaatagaactagcaagtagaaacaaacatgaattgaataggctaatattgctttgaattatgatttccttacctcagatcctc |
42655986 |
T |
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| Q |
418 |
caagaccctctc |
429 |
Q |
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| T |
42655987 |
caagaccctctc |
42655998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 43052225 - 43052029
Alignment:
| Q |
159 |
gtttagaaattaccttcatgaccaaactgtttgacttggtattctctgctattaatttgtgtataggaccaacaggaactttcttagtggccttaacttc |
258 |
Q |
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| T |
43052225 |
gtttacaaattaccttcacgaccaaactgtctgatttggccttctgtgctattggtttgtgtattggtccaataggaactttatgagtgcccttaacttc |
43052126 |
T |
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| Q |
259 |
atcttctaccgtttcctgatatattgcctaacataatatagtttacaatgattcaagaattagcagatgaaaattcaaatagaactagcaagtagaaaca |
358 |
Q |
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| T |
43052125 |
atcttctaccatttcctgatatatttcctgac---atatagtttagaattgttca------agcagttgaaaattgaaatagaactaacaagtaggaata |
43052035 |
T |
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