View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1910_low_2 (Length: 826)
Name: NF1910_low_2
Description: NF1910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1910_low_2 |
 | |
|
| [»] chr8 (12 HSPs) |
| |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 126 - 826
Target Start/End: Complemental strand, 22470789 - 22470107
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaacctcaacaaattttgtctaatgttgattgattga |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22470789 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaacctcaacaaat------------------attga |
22470708 |
T |
|
| Q |
226 |
atcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22470707 |
atcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaaaccacttgattcgattcaaatgttccttgaatcgtatcaatctgc |
22470608 |
T |
|
| Q |
326 |
atagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttgccactaatattgcacttatcact |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22470607 |
atagctaaagatttatcctttttcacatgtctgaattgaatcatacttagtgtgattcgaatcaagtcgttgttttgccactaatattgcacttatcact |
22470508 |
T |
|
| Q |
426 |
catgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttca |
525 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||| |||| | |
|
|
| T |
22470507 |
catgtctgtatatagctatacccatacaccttccaacttcctgaatatattgctaataacattcttgagtctccaaccctctctctccacttgtttttaa |
22470408 |
T |
|
| Q |
526 |
gattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattga |
625 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
22470407 |
gattaaacctttttcctaatgatttatgtggactttgaatcatagattgcaagagtgatatatgaattgtagattggtttctttcaaggaatttgattga |
22470308 |
T |
|
| Q |
626 |
ggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcgg |
725 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
22470307 |
ggatcaaggttctaaaagaaaagagggatttctttccacctccaatggaaattttgagggtctttctaacttctcaagttcaaggggatccaagcttcgg |
22470208 |
T |
|
| Q |
726 |
acatagcaaagaagaattcaaggtcacacgcaacttaactcacattatgaaacaagacaaaacactgtagaagtgacaagaaatattatgtaccagcaat |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22470207 |
acatagcaaagaagaattcaaggtcacacgcaacttaactcacattatgaaacaagacaaaacactgtagaagtgacaagaaatattatgtacctgcaat |
22470108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 222 - 744
Target Start/End: Complemental strand, 22472172 - 22471649
Alignment:
| Q |
222 |
ttgaatcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaat |
321 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||||||||| ||| ||| |||||| | || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22472172 |
ttgaatcaattcattttcttgccttagcacttttgaagcgtattaatcttcatccgaaaaccacttgattcgattcaaatgttccttgaatcgtatcgat |
22472073 |
T |
|
| Q |
322 |
ctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcactta |
420 |
Q |
| |
|
| ||||||| | |||||||||||||||| ||| ||||| |||||| ||||| |||||||| |||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
22472072 |
tttcatagctccaaatttatcctttttcacttgtgtgaatcgaatcacacttagtgtgattcaaatcaagtcattgtttttgccacaaatattgcactta |
22471973 |
T |
|
| Q |
421 |
tcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgat |
520 |
Q |
| |
|
|||||| || || || ||||||||||||||||||||||||||||| ||| || || ||||||||||| |||||| | ||||||||| |||||||| | |
|
|
| T |
22471972 |
tcactcctgcctatatgtagctatacccatacaccttccaacttaccaaatcaatgacaaataacattctagagtcttcaaacctctctatccacttgtt |
22471873 |
T |
|
| Q |
521 |
tttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttg |
620 |
Q |
| |
|
|| ||||||||| |||||||||| ||||||| || ||||| ||||||||||| ||||| |||| || ||||| | || ||||||||||| |||||| |
|
|
| T |
22471872 |
ctttagattaaacattttttctaagattttttgtcgattttgagtcatagattgctagagtactataagatttgtacaatggtttctttcaaggaatttg |
22471773 |
T |
|
| Q |
621 |
attgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagc |
720 |
Q |
| |
|
|||||||||||| | |||||| |||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
22471772 |
attgaggatcaaaggtctaaataaaaagaggaatttctttccacctccaaggggaattgtgggggtctttctaacttctcaagttcaaggggatccaagc |
22471673 |
T |
|
| Q |
721 |
ttcggacatagcaaagaagaattc |
744 |
Q |
| |
|
||| |||||| ||| |||||||| |
|
|
| T |
22471672 |
ttcaaacatagaaaataagaattc |
22471649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 461 - 751
Target Start/End: Original strand, 8988930 - 8989220
Alignment:
| Q |
461 |
acttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggact |
559 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||| ||||||| |||||||||| | |||| ||||||| |||||||||| |||| |||||||| | |
|
|
| T |
8988930 |
acttactgaatcaattgcaaataacattctagagtctcctaacctctgtctccacttgttcttcatattaaacattttttctaa-gattctttgtggatt |
8989028 |
T |
|
| Q |
560 |
ttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctt |
659 |
Q |
| |
|
|| | ||||||||||| |||||| |||| || ||||| |||| ||||||||||| || |||||||||||||| || |||||||||||||||| |||| || |
|
|
| T |
8989029 |
tttagtcatagattgctagagtgctataagagttgtacattggtttctttcaaggaacttgattgaggatcatgggtctaaaggaaaagaggaatttgtt |
8989128 |
T |
|
| Q |
660 |
tccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggtca |
751 |
Q |
| |
|
|||||||| || | ||||||| ||| ||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8989129 |
tccacctctaaggggaattgtggggggttttctaacttctcaagtttaagccgatccaagctttggacatagcaacgaagaattcaaggtca |
8989220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 306 - 749
Target Start/End: Complemental strand, 28915385 - 28914940
Alignment:
| Q |
306 |
cttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gcc |
404 |
Q |
| |
|
||||| |||||| ||||| ||||||| |||||| ||| ||||||| ||||| ||| |||||||| |||| | ||| |||| | ||||| |||| ||| |
|
|
| T |
28915385 |
cttgattcgtattaatct-catagcttcagatttttcccttttcacgtgtctaaatcgaatcataattaacattatttgaataatatagttatttttgcc |
28915287 |
T |
|
| Q |
405 |
actaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacc |
504 |
Q |
| |
|
|| || ||||||||| |||||||||||| || |||||||||||||||||| |||||||| | ||| ||| | ||||||||| | |||||||| ||| |
|
|
| T |
28915286 |
acaaaaattgcacttgtcactcatgtctatatatagctatacccatacactttccaactcataaaatcaattgcaaataacattttagagtctccaaact |
28915187 |
T |
|
| Q |
505 |
tctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgtt |
603 |
Q |
| |
|
||||||| ||||| | |||||||||||| ||||||||| |||| |||||||| ||||| ||||| ||||| |||||| || | |||||||| |||| | |
|
|
| T |
28915186 |
tctctcttcactttctcttcagattaaacactttttctaa-gattctttgtggattttgattcataaattgctagagtgctacaagaattgtacattggt |
28915088 |
T |
|
| Q |
604 |
ttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgaggg--tctttctaacttctca |
701 |
Q |
| |
|
|||||||| | || ||||||||||||||||| |||| |||||| ||||||||||||||| |||| | ||||||| ||| |||||||||||||| | |
|
|
| T |
28915087 |
ttctttcagggaacttgattgaggatcaagggtctacgaaaaaagacggatttctttccaccaccaacgggaattgtggggggttctttctaacttctta |
28914988 |
T |
|
| Q |
702 |
aatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||||||| |||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
28914987 |
cgtttaaggagatccaagcttcaaacttagaaaagaagaattcaaggt |
28914940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 14180325 - 14180223
Alignment:
| Q |
127 |
ttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctcaacaaattttgtctaatgttgattgattg |
224 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||| |||| | ||||||||| ||||| |||||||||||||||| |
|
|
| T |
14180325 |
ttttcgtataaatcatattctattttcattcataagttaggatatcaacaaatgcatcaataaaagaactcaacaaagtttgtttaatgttgattgattg |
14180226 |
T |
|
| Q |
225 |
aat |
227 |
Q |
| |
|
||| |
|
|
| T |
14180225 |
aat |
14180223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 492 - 663
Target Start/End: Complemental strand, 24176047 - 24175875
Alignment:
| Q |
492 |
gagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaa |
591 |
Q |
| |
|
|||||||| |||||||||||||| ||| | |||||||||||| |||||||||| || |||||| |||||| ||||||||| | |||||| |||| | | |
|
|
| T |
24176047 |
gagtctccaaacctctctctccatttgttcttcagattaaacattttttctaagaatcattgtggtctttgagtcatagattactagagtgctataagga |
24175948 |
T |
|
| Q |
592 |
ttgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggatttctttcca |
663 |
Q |
| |
|
||||| |||| || |||||||| | ||| || | |||||||||| |||| ||| |||| |||||||||||| |
|
|
| T |
24175947 |
ttgtatattgattgctttcaaggatcttggttaggaatcaaggttcaaaagtgaatagagtgatttctttcca |
24175875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 22470902 - 22470856
Alignment:
| Q |
13 |
aatatgcatgtaaaatacttgaaaacaaaacatcatttactcttcat |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22470902 |
aatatgcatgtaaaatacttgaaaacaaaacatcatttactcttcat |
22470856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 37232034 - 37231970
Alignment:
| Q |
127 |
ttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa |
191 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
37232034 |
ttttcgtataaatcatattctattttcatttatatgttaggatatcaacaaatgcatcaataaaa |
37231970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 2813636 - 2813742
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctc--aacaaattttgtctaatgttgattga |
221 |
Q |
| |
|
||||| |||||||||||||||||| |||||| |||||||||||||||||||| | |||| |||| | ||| |||||| ||||| ||||||||||||| |
|
|
| T |
2813636 |
gtttttgtataaatcatattctattttcattcatatgttaggatatcaacaaatatatcaataaaagaactcaaaacaaagtttgtttaatgttgattga |
2813735 |
T |
|
| Q |
222 |
ttgaatc |
228 |
Q |
| |
|
|| |||| |
|
|
| T |
2813736 |
ttaaatc |
2813742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 31431251 - 31431357
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctca--acaaattttgtctaatgttgattga |
221 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||| ||||||| |||||| ||| ||||||||||||| | |||| |||||||||||||||| |||||| |
|
|
| T |
31431251 |
gttttcatataaatcatattatattttcattcatatgttaagatatccacagaaacatcattaaaagaactcaacacaaattttgtctaatcttgattat |
31431350 |
T |
|
| Q |
222 |
ttgaatc |
228 |
Q |
| |
|
||||||| |
|
|
| T |
31431351 |
ttgaatc |
31431357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 9136595 - 9136646
Alignment:
| Q |
127 |
ttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaa |
178 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
9136595 |
ttttcgtataaatcatattctattttcattcatatgttatgatatcaacaaa |
9136646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 670
Target Start/End: Complemental strand, 17730108 - 17729987
Alignment:
| Q |
550 |
tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaag |
648 |
Q |
| |
|
||||||| |||| | |||||| ||| |||||| ||| | ||||||||||| |||| |||||| || ||||||||| ||||||| || | || ||| | |
|
|
| T |
17730108 |
tttgtggtcttttagtcatagtttgttagagtgctattggtattgtagattggtttcattcaaggaacttgattgagaatcaagggtccatagtgaatcg |
17730009 |
T |
|
| Q |
649 |
agggatttctttccacctccaa |
670 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
17730008 |
agtgatttctttccacctccaa |
17729987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 222 - 749
Target Start/End: Original strand, 9633582 - 9634110
Alignment:
| Q |
222 |
ttgaatcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaat |
321 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||| | ||||||| ||||| ||||| | |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
9633582 |
ttgaatagattcatttccttgcctctactatttcgaatcgtatcaatcttcatatggaaaatagttgattcgattcaaatgttcattgaatcatatcaat |
9633681 |
T |
|
| Q |
322 |
ctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttg-ccactaatattgcactta |
420 |
Q |
| |
|
|| ||||||| | |||| | |||||||||||||||||| || |||| |||| | | || ||||||||| |||||||| |||| || || |||||| |
|
|
| T |
9633682 |
cttcatagcttcaaatttcccttttttcacatgtctgaatcgattcatgcttagtaagttttgaatcaagtcgttgtttttaccacaaaaataacactta |
9633781 |
T |
|
| Q |
421 |
tcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgat |
520 |
Q |
| |
|
|||||||||| | || |||| ||||| |||||||||||||||| | ||||| ||| | |||| || ||| |||||||| ||||||| | ||||| || | |
|
|
| T |
9633782 |
tcactcatgtatatatatagttatacacatacaccttccaactcaatgaatcaattgcaaatatcaatctagagtctccaaacctctttgtccacatgtt |
9633881 |
T |
|
| Q |
521 |
tttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttg |
620 |
Q |
| |
|
|| ||||||||| ||||||||| ||| |||||||| ||||||||||||| |||| ||||||||| || ||||| |||| |||||||||||||| ||| |
|
|
| T |
9633882 |
cttgagattaaacactttttctaa-gatctttgtggattttgaatcatagaatgcataagtgatataggagttgtatattggtttctttcaagaaacttg |
9633980 |
T |
|
| Q |
621 |
attgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaa |
718 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
9633981 |
attgaggatcaagggtctaaaggaaaagagagatttctttcaacctccaaag-aaattgtgggggtctttctaacttctcaaaggttcaaggggatccaa |
9634079 |
T |
|
| Q |
719 |
gcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||||| |||||| ||||||||||||| |||| |
|
|
| T |
9634080 |
gcttcagacataacaaagaagaattcgaggt |
9634110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 350 - 749
Target Start/End: Complemental strand, 21936432 - 21936028
Alignment:
| Q |
350 |
acatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttg-ccactaatattgcacttatcactcatgtctgtagatagctataccc |
448 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||| ||||| || || |||| |||| ||||||||| ||||||||| | || || | || ||||||| |
|
|
| T |
21936432 |
acatgtctgaatataatcatacttactatgattcaaatcacgtctttttttttaccacaaatattgcagttatcactccttcctatatacagatataccc |
21936333 |
T |
|
| Q |
449 |
atacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatg-- |
546 |
Q |
| |
|
||||| ||||||||||||||||| ||| | ||||||||||| |||||||| |||||||||| ||||||| | || ||||||||| |||||||||| |
|
|
| T |
21936332 |
atacaacttccaacttactgaatcaattgcaaataacattctagagtctccaaacctctctccccacttgttctttagattaaacactttttctaatatt |
21936233 |
T |
|
| Q |
547 |
-att-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaagga |
644 |
Q |
| |
|
||| |||||||| ||||| ||||||||||| |||||| |||| |||| || ||| ||||||| || || |||||||||||||||| |||||| || |
|
|
| T |
21936232 |
aattatttgtggaatttgagtcatagattgctagagtgctataggaatcatacattagtttcttttgaggaacttgattgaggatcaagtgtctaaaaga |
21936133 |
T |
|
| Q |
645 |
aaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattc |
744 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
21936132 |
aaagagggatttctttccacctccaaggggaattgtgggggtctttctaacttctcaagttctgggggatctaagcttcgaacatagcaaagaagaattc |
21936033 |
T |
|
| Q |
745 |
aaggt |
749 |
Q |
| |
|
||||| |
|
|
| T |
21936032 |
aaggt |
21936028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 254 - 749
Target Start/End: Complemental strand, 7230478 - 7229982
Alignment:
| Q |
254 |
ttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcct-ttttcaca |
352 |
Q |
| |
|
||||| |||||| |||||| ||||||| | ||||||| ||||| |||||| ||||||||||||||||| || |||| | ||| |||| ||||||| |
|
|
| T |
7230478 |
ttgaatcatatcgatattcgtctggaaaacctttgattcaattcacatgttctttgaatcgtatcaatcttcaaagcttcaacttt-tcctattttcacg |
7230380 |
T |
|
| Q |
353 |
tgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagatagctatacccata |
451 |
Q |
| |
|
||||||||| | ||||||||| | |||||||||||| || ||| |||| |||||||| ||| ||||| |||||||||||| || ||||||| | || | |
|
|
| T |
7230379 |
tgtctgaatcaattcatacttagtatgattcgaatcatgtcgttatttttgccactaaaatttcacttgtcactcatgtctatatatagctaaaaacaca |
7230280 |
T |
|
| Q |
452 |
caccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttt |
551 |
Q |
| |
|
||||||||||| | ||||| | || | |||| || ||| |||| | | |||||||||||| ||||| | || ||||||||| ||||||||| ||| || |
|
|
| T |
7230279 |
taccttccaactcattgaattt-ttgcaaatatcactctagagtatacaaacctctctctctacttgttcttaagattaaacactttttctaa-gatctt |
7230182 |
T |
|
| Q |
552 |
tgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagg |
651 |
Q |
| |
|
||| || ||||| ||||||||| | || || | || || ||||| |||| ||||||||||| || |||||||||| |||| | |||||||||||||| | |
|
|
| T |
7230181 |
tgtagattttgagtcatagatttctaggatgctctaagagttgtacattggtttctttcaaggaacttgattgaggctcaaagatctaaaggaaaagaag |
7230082 |
T |
|
| Q |
652 |
gatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||| ||||||||||||||| | || | | |||| |||||||||||||||| || ||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
7230081 |
gatatctttccacctccaagggaattatggggggtgtttctaacttctcaaaggttcaaggggatccaagcttccaacatagaaaataagaattcaaggt |
7229982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 568 - 691
Target Start/End: Original strand, 4566895 - 4567018
Alignment:
| Q |
568 |
tagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctc |
667 |
Q |
| |
|
|||||||| |||||| |||| |||||||| |||| ||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
4566895 |
tagattgctagagtgctataagaattgtacattggtttcttttaaggaacttgattgaggatcaagggtctaaaggaaaagagggatttcttttcacctc |
4566994 |
T |
|
| Q |
668 |
caatgaaaattgtgagggtctttc |
691 |
Q |
| |
|
| | | ||||||| ||||||||| |
|
|
| T |
4566995 |
ctaggtgaattgtgggggtctttc |
4567018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 44798060 - 44798112
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaa |
178 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
44798060 |
gttttcgtataaatcatattatattttcattcatatgttaggatatcaacaaa |
44798112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 28489727 - 28489781
Alignment:
| Q |
695 |
cttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
|||||||| || ||||||||||||||| ||| || | |||||||||||||||||| |
|
|
| T |
28489727 |
cttctcaagttcaaggggatccaagctccgggcacaacaaagaagaattcaaggt |
28489781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 48079156 - 48079242
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaacctcaacaaattttgtctaatgt |
214 |
Q |
| |
|
|||||| ||||||||||||||||| | |||| || || | ||||||||||||| |||||| | | ||||| |||||||||||||||| |
|
|
| T |
48079156 |
gttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaaatcatcat--agaactcaataaattttgtctaatgt |
48079242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 222 - 749
Target Start/End: Complemental strand, 13603664 - 13603136
Alignment:
| Q |
222 |
ttgaatcgattcatttccttgcctgagcacttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaat |
321 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||| | ||||||| ||||| ||||| | |||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
13603664 |
ttgaatagattcatttccttgcctctactatttcgaatcgtatcaatcttcatatggaaaatagttgattcgattcaaatgttcattgaatcatatcaat |
13603565 |
T |
|
| Q |
322 |
ctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttg-ccactaatattgcactta |
420 |
Q |
| |
|
|| ||||||| | |||| | |||||||||||||||||| || |||| |||| | | || ||||||||| |||||||| |||| || || |||||| |
|
|
| T |
13603564 |
cttcatagcttcaaatttcccttttttcacatgtctgaatcgattcatgcttagtaagttttgaatcaagtcgttgtttttaccacaaaaataacactta |
13603465 |
T |
|
| Q |
421 |
tcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgat |
520 |
Q |
| |
|
|||||||||| | || |||| ||||| |||||||||||||||| | ||||| ||| | |||| || ||| |||||||| ||||||| | ||||| || | |
|
|
| T |
13603464 |
tcactcatgtatatatatagttatacacatacaccttccaactcaatgaatcaattgcaaatatcaatctagagtctccaaacctctttgtccacatgtt |
13603365 |
T |
|
| Q |
521 |
tttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttg |
620 |
Q |
| |
|
|| ||||||||| ||||||||| ||| |||||||| ||||||||||||| |||| ||||||||| || ||||| |||| |||||||||||||| ||| |
|
|
| T |
13603364 |
cttgagattaaacactttttctaa-gatctttgtggattttgaatcatagaatgcataagtgatataggagttgtatattggtttctttcaagaaacttg |
13603266 |
T |
|
| Q |
621 |
attgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaa |
718 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
13603265 |
attgaggatcaagggtctaaaggaaaagagagatttctttcaacctccaaag-aaattgtgggggtctttctaacttctcaaaggttcaaggggatccaa |
13603167 |
T |
|
| Q |
719 |
gcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||||| |||||| ||||||||||||| |||| |
|
|
| T |
13603166 |
gcttcagacataacaaagaagaattcgaggt |
13603136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 408 - 749
Target Start/End: Complemental strand, 14118800 - 14118457
Alignment:
| Q |
408 |
aatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctct |
507 |
Q |
| |
|
|||||||||||||||||| || | || |||||||||||||||| ||||||| || ||| | |||| || |||||| |||||| | ||||||| |
|
|
| T |
14118800 |
aatattgcacttatcacttattcttatatatagctatacccataccacttccaaaatattgagttaattatagctatcattctagagtcttcaaacctct |
14118701 |
T |
|
| Q |
508 |
ctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttc |
606 |
Q |
| |
|
|||||||||| | || ||||||||| |||||||||| |||| |||||||| ||||| | ||| ||||| || ||| |||| | ||||||||||| |||| |
|
|
| T |
14118700 |
ttctccacttgttattgagattaaacattttttctaa-gattctttgtggattttgagttatatattgctagggtgctatagggattgtagattggtttc |
14118602 |
T |
|
| Q |
607 |
tttcaagaaatttgattgaggatcaaggttctaaagg-aaaagagggatttctttccacctccaatg-aaaattgtgagggtctttctaa-cttctcaaa |
703 |
Q |
| |
|
||||||| || |||||| | ||||||| || ||||| ||||||| |||||||||||||||||| | | ||||| | |||||||||| ||||||| |
|
|
| T |
14118601 |
tttcaaggaacttgatttggaatcaagggtccaaaggaaaaagagaaatttctttccacctccaaggtgattttgtg-gagtctttctaatcttctcacg |
14118503 |
T |
|
| Q |
704 |
tttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||| |||| ||| |||| |
|
|
| T |
14118502 |
ttcaaggggatccaatcttcggacatagaaaataagagttcgaggt |
14118457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 44746670 - 44746564
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcatt--aaaacctc--aacaaattttgtctaatgttgattga |
221 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||| |||||||||||||||| ||||| | |||| ||| |||||| ||||| |||||||| |||| |
|
|
| T |
44746670 |
gttttcgtataaatcatattttattttcattcatatcttaggatatcaacaaatgcatcaataaaaaaactcaaaacaaagtttgtttaatgttggttga |
44746571 |
T |
|
| Q |
222 |
ttgaatc |
228 |
Q |
| |
|
||||||| |
|
|
| T |
44746570 |
ttgaatc |
44746564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 22198741 - 22198792
Alignment:
| Q |
127 |
ttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaa |
178 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
22198741 |
ttttcgtataaatcatatcgtattttcatttatatgttaggatatcaacaaa |
22198792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 40391363 - 40391445
Alignment:
| Q |
127 |
ttttcgtataaatcatattctatattcatttctatgttagg--atatcaacaaaaacatcattaaa--acctcaacaaatttt |
205 |
Q |
| |
|
|||| |||||||||||||| ||| || ||| |||||||||| |||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
40391363 |
tttttgtataaatcatattttatttttattgctatgttaggatatatcaacaaaatcatcattaaaataactcaacaaatttt |
40391445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 44987490 - 44987419
Alignment:
| Q |
159 |
tatgttaggatatcaacaaaaacatcattaaaac--ctcaacaaattttgtctaatgttgattgattgaatc |
228 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||| ||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
44987490 |
tatgttaagatttcaacataaacatcattaaaagaactcgacaaattttgtataatgttgattaattgaatc |
44987419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 28101881 - 28101940
Alignment:
| Q |
132 |
gtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa |
191 |
Q |
| |
|
|||||||| ||||| ||| ||||||| |||||||||||| |||||||| ||| ||||||| |
|
|
| T |
28101881 |
gtataaattatattatattttcatttatatgttaggataacaacaaaagcattattaaaa |
28101940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 25059403 - 25059499
Alignment:
| Q |
127 |
ttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctca--acaaattttgtctaatgttgatt |
219 |
Q |
| |
|
||||| ||||||||||||| ||| || ||| |||||||| ||||||||| ||||||||| ||| | |||| ||||||||| ||||||||||||| |
|
|
| T |
25059403 |
ttttcctataaatcatattatatgtttattcatatgttagtatatcaacataaacatcatcaaaagaactcaacacaaattttatctaatgttgatt |
25059499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 251 - 749
Target Start/End: Complemental strand, 18831415 - 18830916
Alignment:
| Q |
251 |
cttttgaagcatatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttca |
350 |
Q |
| |
|
|||||||| | ||||||| ||||||||||| |||||| |||||||| |||| || |||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
18831415 |
cttttgaatcgtatcaatcttcatctggaaaccacttaattcgattaaaatattgcttgaatcgtatcaatcttcatagctcttgatttatcctttttca |
18831316 |
T |
|
| Q |
351 |
catgtctgaattgaatcatacttaatgtgattcgaatcaagtagttg-ttttgccactaatattgcacttatcactcatgtctgtagatagctataccca |
449 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| |||| ||||| ||| ||||||||||||||||||| || || || |||||||||| | |
|
|
| T |
18831315 |
catgtctgaatcgaatcatacttaacgtgattcgaatcaagtcgttgtttttggcacaaatattgcacttatcactcctgcctatatgtagctataccta |
18831216 |
T |
|
| Q |
450 |
tacaccttccaacttactgaatatattactaataacattcttgagtctcccaa--------cctctctctccacttgattttcagattaaaccttttttc |
541 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||| |||| |||||||| || ||||||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
18831215 |
tacaccttccaactcactgaatcagatgcaaataactttctagagtctccaaagccctctctctctctctccacttgttgttcagatttaacattttttc |
18831116 |
T |
|
| Q |
542 |
taatgatt-tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaa |
640 |
Q |
| |
|
||| |||| ||||||| ||||| ||||||||||| |||||| |||| |||||||| |||| ||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
18831115 |
taa-gattcattgtggattttgagtcatagattgctagagtgctataggaattgtacattggtttctttcaaggaacttgattgaggatcaagggtctaa |
18831017 |
T |
|
| Q |
641 |
aggaaaagagggatttctttccacctccaatgaaaat--tgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaa |
738 |
Q |
| |
|
||||||| |||| |||||||| | |||| || | ||||||||||||||| |||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
18831016 |
aggaaaacaggg----------acctccaagggaaattatgggggggtctttctaacttttcaagttgaaggggatccaagcttcagacatagcaaagaa |
18830927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 285 - 749
Target Start/End: Original strand, 27877664 - 27878126
Alignment:
| Q |
285 |
cttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcg |
384 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| || ||||||| |||||||||| ||| ||||||||||||| |||||| |||| | ||| ||| |
|
|
| T |
27877664 |
cttgattcgattcaaatgttactttaatcgtatcaaccttcatagctccagatttatccatttacacatgtctgaatcgaatcacactttctttgaatcg |
27877763 |
T |
|
| Q |
385 |
aatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaata |
483 |
Q |
| |
|
||||| || |||||||| ||| |||| ||||||||||||| || | || ||| |||||||||||||| ||||||||||||||| ||| | ||| |
|
|
| T |
27877764 |
aatcatgtcgttgtttttgcctaaaatactgcacttatcacttctgcttatatataactatacccatacactttccaacttactgaagcaattgcaaatg |
27877863 |
T |
|
| Q |
484 |
acattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaagagtg |
582 |
Q |
| |
|
||||||| ||| |||| |||||||||| |||||| | |||||||||||| |||||| || |||| |||||||| ||||| |||||||||| |||| |
|
|
| T |
27877864 |
acattctagagcctccaaacctctctc--cacttgttattcagattaaacactttttcgaa-gattctttgtggattttgagtcatagattgttttagtg |
27877960 |
T |
|
| Q |
583 |
atatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtga |
682 |
Q |
| |
|
|||||| |||||| |||| ||||||| ||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||| |
|
|
| T |
27877961 |
ctatatggattgtacattggtttctttgaaggaacttgattgaggatcaaggttctaaaggaaaagaggaatttgtttccacctccaaggtgaattgtgg |
27878060 |
T |
|
| Q |
683 |
gggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
|||| |||||||||| |||| | ||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
27878061 |
gggt-tttctaacttatcaagctcaaggggatctaagctttagacatagcaaagaagaatttaaggt |
27878126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 262 - 749
Target Start/End: Original strand, 18371033 - 18371519
Alignment:
| Q |
262 |
tatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaat |
361 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |||||| | ||| ||||||||||||||| ||||| |
|
|
| T |
18371033 |
tatcaatcatcatttggaaaacacttgattcgattcacatgttttttgaatcgtatcaatctttatagcttcaattttctcctttttcacatgtttgaat |
18371132 |
T |
|
| Q |
362 |
tgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttcca |
460 |
Q |
| |
|
|| ||||||||| | |||| |||||||| |||||||| |||| || |||||||||||| ||| |||| | |||||||||||||| | |
|
|
| T |
18371133 |
cgattcatacttagtacaattcaaatcaagtcgttgtttttgccaaaaag-ttgcacttatcaatcacgtct----------acacccatacaccttcaa |
18371221 |
T |
|
| Q |
461 |
acttactgaatatattactaataacattcttgagtctcccaacctctctctcca--------cttgattttcagattaaaccttttttctaatgattttt |
552 |
Q |
| |
|
||| ||| ||| ||| | |||| |||||| ||||||| |||||||||||| | |||| | || ||||||||| |||||||||| || ||| |
|
|
| T |
18371222 |
actcactaaatcaattgcaaatatcattctagagtctctaaacctctctctctatatatatacttgttcttgagattaaacactttttctaat-atattt |
18371320 |
T |
|
| Q |
553 |
gtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagaggg |
652 |
Q |
| |
|
|| || ||||| ||||||||| | ||| || ||| || || || |||| ||||||||||| || ||||||||||||||||| || ||||||||| || | |
|
|
| T |
18371321 |
gtagattttgagtcatagatttctagattgccataggagttttacattggtttctttcaaggaacttgattgaggatcaagggtccaaaggaaaatagag |
18371420 |
T |
|
| Q |
653 |
atttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaa--tttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||||||||||| || || ||||| |||||||||| ||||| |||||| |||||||||| |
|
|
| T |
18371421 |
ctttctttccacctccaaggggaattgtgagtgtctttctaacttctcaaaggttcaaagggattcaagcttcgggcatagaaaagaaaaattcaaggt |
18371519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 482 - 749
Target Start/End: Original strand, 25897264 - 25897535
Alignment:
| Q |
482 |
taacattcttgagtctcccaacctctctctccacttgattttcagattaaac-cttttttctaatgatttttgtggactttgaatcatagattgcaagag |
580 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||| | |||||||||||| |||||||||| |||||||||| ||||| ||||||| ||| | | |
|
|
| T |
25897264 |
taacattctagagtctccaaacttctctctccacttgttcttcagattaaacatttttttctaagattttttgtggattttgagtcatagactgccatgg |
25897363 |
T |
|
| Q |
581 |
tgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaagg--aaaagagggatttctttccacctccaatgaaaatt |
678 |
Q |
| |
|
|| |||| | |||||| |||| |||| |||||| || ||| ||| | ||||||| | ||||| ||||||| ||||| ||||||| ||||| | |||| |
|
|
| T |
25897364 |
tgctatagggattgtatattgatttcattcaaggaacttggttgggaatcaagggttcaaaggtaaaaagagtgatttatttccacttccaaggtgaatt |
25897463 |
T |
|
| Q |
679 |
gtgagggtctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||| |||||||||||| |||||||| || || |||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
25897464 |
gtgggggtctttctaatcttctcaagttcaaagggatccaagctccggacattgcaaagaagagttcaaggt |
25897535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 16374583 - 16374495
Alignment:
| Q |
286 |
ttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatactta |
374 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || || ||||||| | |||| ||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
16374583 |
ttgattcgattcaaatattgcttgaatcgtataaaccttcatagctccaaatttgtccatttacacatgtttgaattgaatcatactta |
16374495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 36925791 - 36925686
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctc--aacaaattttgtctaatgttgattga |
221 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||| |||||||||||| |||||| |||| | ||| |||||| ||||| ||||||||||||| |
|
|
| T |
36925791 |
gttttcgtaaaaatcatattctattttcattcacatgtta-gatatcaacaaatacatcaataaaagaactcaaaacaaagtttgtttaatgttgattga |
36925693 |
T |
|
| Q |
222 |
ttgaatc |
228 |
Q |
| |
|
||||||| |
|
|
| T |
36925692 |
ttgaatc |
36925686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 3353373 - 3353321
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaa |
178 |
Q |
| |
|
||||||||||||||||||| | || |||||| |||||||||||||||||||| |
|
|
| T |
3353373 |
gttttcgtataaatcatatccaattttcattcatatgttaggatatcaacaaa |
3353321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 643
Target Start/End: Original strand, 27488146 - 27488299
Alignment:
| Q |
489 |
cttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatat |
588 |
Q |
| |
|
||||||||| | ||||||| |||||||||| | | ||||||||| |||| || | || |||||||| | ||| ||||| ||||| |||||| |||| |
|
|
| T |
27488146 |
cttgagtcttcaaacctctgtctccacttgttcattagattaaacactttt-cttagaatctttgtggattgtgagtcataaattgctagagtgctatag |
27488244 |
T |
|
| Q |
589 |
gaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaagg |
643 |
Q |
| |
|
| |||||| |||| ||||||||||| || ||||||| | ||||||| || ||||| |
|
|
| T |
27488245 |
ggattgtaaattggtttctttcaaggaacttgattgggaatcaagggtccaaagg |
27488299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 26352851 - 26352798
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttct-atgttaggatatcaacaaa |
178 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| | ||||||||||||||||||| |
|
|
| T |
26352851 |
gttttcgtataaatcatattttattttcattcataatgttaggatatcaacaaa |
26352798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 30615104 - 30615149
Alignment:
| Q |
287 |
tgattcgattcaaatgttccttgaatcgtatcaatctgcatagcta |
332 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| || |||||||| |
|
|
| T |
30615104 |
tgattcgattcaaatattgcttgaatcgtatcaaccttcatagcta |
30615149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 4e-74; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 341 - 749
Target Start/End: Original strand, 22903501 - 22903911
Alignment:
| Q |
341 |
tcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagata |
439 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||| |||||| | || ||| |
|
|
| T |
22903501 |
tcctttttcatgtgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgtttttgccacaaaaattgcacttgtcagtcatgtatatatata |
22903600 |
T |
|
| Q |
440 |
gctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttt |
539 |
Q |
| |
|
| ||||| ||||||||||||||||| | ||| ||| | ||||| ||||| |||||||| |||||||||||||||||| | || ||||||||| |||| |
|
|
| T |
22903601 |
gttatactaatacaccttccaacttatttaatcaattgcaaataatattctagagtctccaaacctctctctccacttgttcttgagattaaacactttt |
22903700 |
T |
|
| Q |
540 |
tctaatga--tttttgtggactttgaatcatagattgcaagagtgatatatgaattgtaga-ttgttttctttcaagaaatttgattgaggatcaaggtt |
636 |
Q |
| |
|
||||| || |||||||||| ||| | ||||||||||| |||||| |||| |||||||| | | |||| ||| ||| || ||||||||||||||||| | |
|
|
| T |
22903701 |
tctaa-gatttttttgtggatttttagtcatagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggat |
22903799 |
T |
|
| Q |
637 |
ctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaag |
736 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || | |||||||| ||| ||||||||||| |||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
22903800 |
ctaaaggacaagagggatttctttccacctcgaagggaaattgtg-ggggctttctaacttttcaagtttaaggggatccaaatttcaaacatagaaaat |
22903898 |
T |
|
| Q |
737 |
aagaattcaaggt |
749 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22903899 |
aagaattcaaggt |
22903911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 341 - 749
Target Start/End: Original strand, 22885543 - 22885955
Alignment:
| Q |
341 |
tcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagata |
439 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||| || |||||| | | ||| |
|
|
| T |
22885543 |
tcctttttcatgtgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgtttttgccacaaaaattgcacttggcattcatgtatatgtata |
22885642 |
T |
|
| Q |
440 |
gctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttt |
539 |
Q |
| |
|
| ||||| |||||||||||||||||| | ||| ||| | ||||| ||||| |||||||| |||||| ||||||||||| | || ||||||||| |||| |
|
|
| T |
22885643 |
gttatactcatacaccttccaacttatttaatcaattgcaaataatattctagagtctccaaacctcgctctccacttgttcttgagattaaacactttt |
22885742 |
T |
|
| Q |
540 |
tctaa--tgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagatt-gttttctttcaagaaatttgattgaggatcaaggtt |
636 |
Q |
| |
|
||||| | |||||||||| ||| | ||||||||||| |||||| |||| |||||||| | | |||| ||| ||| || ||||||||||||||||| | |
|
|
| T |
22885743 |
tctaagattttttttgtggatttttagtcatagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggat |
22885842 |
T |
|
| Q |
637 |
ctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaag |
736 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || | ||||||| ||||||||||||||| |||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
22885843 |
ctaaaggacaagagggatttctttccacctcgaaggggaattgtgggggtctttctaacttttcaagtttaaggggatccaaactttaaacatagaaaat |
22885942 |
T |
|
| Q |
737 |
aagaattcaaggt |
749 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
22885943 |
aagaatttaaggt |
22885955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 353 - 746
Target Start/End: Original strand, 22918358 - 22918758
Alignment:
| Q |
353 |
tgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgttttgccactaatattgcacttatcactcatgtctgtagatagctatacccatac |
452 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| |||||||||||||||| || ||||||||| ||| |||||| | || ||| ||||| | ||| |
|
|
| T |
22918358 |
tgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgttttgccacaaaaattgcacttgtcagtcatgtatatatatatttatactcgtac |
22918457 |
T |
|
| Q |
453 |
accttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgattttt |
552 |
Q |
| |
|
||||||||||| | | ||| ||| | ||||| ||||| |||||||| |||||||||||||||||| | || ||||||||| ||||||||| ||||| |
|
|
| T |
22918458 |
accttccaactcatttaatcaattgcaaataatattctagagtctccaaacctctctctccacttgttcttgagattaaacactttttctaagatttttt |
22918557 |
T |
|
| Q |
553 |
gtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttc-------taaaggaa |
645 |
Q |
| |
|
||||| ||| | ||||||||||| |||||| |||| |||||||| | | ||| ||||||| | ||||||||||||||||| || ||||||| |
|
|
| T |
22918558 |
gtggatttttagtcatagattgctagagtgttataggaattgtacactagtttatttcaagtaccttgattgaggatcaaggatcaaggacataaaggac |
22918657 |
T |
|
| Q |
646 |
aagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattca |
745 |
Q |
| |
|
|||||||||||||||||||||| || | |||| || | ||||||||||||| |||| ||||||||||||||| |||| |||||| ||| ||||||||| |
|
|
| T |
22918658 |
aagagggatttctttccacctcgaaggggaattatgggagtctttctaacttttcaagtttaaggggatccaaacttcaaacatagaaaataagaattca |
22918757 |
T |
|
| Q |
746 |
a |
746 |
Q |
| |
|
| |
|
|
| T |
22918758 |
a |
22918758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 501 - 670
Target Start/End: Complemental strand, 18561688 - 18561518
Alignment:
| Q |
501 |
aacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagatt |
600 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||||||| | ||| |||| ||||| ||||||||||| |||||| ||||||||||||| ||| |
|
|
| T |
18561688 |
aacctctctctccacttgttcttcagattaaatattttttctaaaattctttttggattttgagtcatagattgctagagtgttatatgaattgtatatt |
18561589 |
T |
|
| Q |
601 |
gttttctttcaagaaatttgattgaggatcaaggttctaaa-ggaaaagagggatttctttccacctccaa |
670 |
Q |
| |
|
| |||| |||||| |||||| ||| | ||||||| || ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
18561588 |
ggtttcattcaaggaatttggttgggaatcaagggtccaaagggaaaagagtgatttctttccacctccaa |
18561518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 558 - 670
Target Start/End: Original strand, 25927770 - 25927883
Alignment:
| Q |
558 |
ctttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggattt |
656 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| | |||||| |||| || |||||||| | ||||||||| ||||||| ||||||| ||| ||| |||| |
|
|
| T |
25927770 |
ctttgagtcatagattgctagagtgatatagggattgtaaattgattgctttcaaggatattgattgagtatcaaggatctaaagtgaattgagtaattt |
25927869 |
T |
|
| Q |
657 |
ctttccacctccaa |
670 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
25927870 |
cattccacctccaa |
25927883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 670
Target Start/End: Complemental strand, 23143476 - 23143356
Alignment:
| Q |
550 |
tttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaaga |
649 |
Q |
| |
|
||||| || ||||| ||||| ||||| | ||| |||| |||||||| |||| ||||||||||| || |||||||||||| |||| || ||||||||||| |
|
|
| T |
23143476 |
tttgtagaatttgagtcatacattgctaaggtgctataggaattgtacattggtttctttcaaggaacttgattgaggataaaggctccaaaggaaaaga |
23143377 |
T |
|
| Q |
650 |
gggatttctttccacctccaa |
670 |
Q |
| |
|
| || | ||| ||||||||| |
|
|
| T |
23143376 |
agaatcttttttcacctccaa |
23143356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 26545983 - 26546086
Alignment:
| Q |
128 |
tttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa-acctca--acaaattttgtctaatgttgattgattg |
224 |
Q |
| |
|
|||||||||||||||||| | | |||| | |||||||||||||||||| ||||||||| ||| | |||| ||||||||||| ||| ||||||||||| |
|
|
| T |
26545983 |
tttcgtataaatcatattatgttttcaatcatatgttaggatatcaacagaaacatcataaaagaactcaagacaaattttgtttaaaattgattgattg |
26546082 |
T |
|
| Q |
225 |
aatc |
228 |
Q |
| |
|
|||| |
|
|
| T |
26546083 |
aatc |
26546086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 522 - 613
Target Start/End: Complemental strand, 24005841 - 24005749
Alignment:
| Q |
522 |
ttcagattaaaccttttttctaatgatttttgtggacttt-gaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaag |
613 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| |||| | | ||||||||| |||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
24005841 |
ttcagattaaacactttttctaagaatttttgtggtcttttgtgttatagattgctagagtgctatatgaattgtaagttgatttctttcaag |
24005749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 573
Target Start/End: Complemental strand, 22728589 - 22728511
Alignment:
| Q |
495 |
tctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagatt |
573 |
Q |
| |
|
||||| ||||||||||| |||||| |||||||||||||| ||||||||| || |||||| ||||| ||||||||| |
|
|
| T |
22728589 |
tctccaaacctctctctacacttgtttttcagattaaacactttttctaagaatcattgtggtgtttgagtcatagatt |
22728511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 138; Significance: 1e-71; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 341 - 749
Target Start/End: Original strand, 9060 - 9471
Alignment:
| Q |
341 |
tcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgtttt-gccactaatattgcacttatcactcatgtctgtagata |
439 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||| |||||| | || ||| |
|
|
| T |
9060 |
tcctttttcatgtgtctgaatcgaatcatacttaacatgattcgaatcatgtagttgtttttgccacaaaaattgcacttgtcagtcatgtatatatata |
9159 |
T |
|
| Q |
440 |
gctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttt |
539 |
Q |
| |
|
| ||||| ||||||||||||||||| | ||| ||| | ||||| ||||| |||||||| |||||| ||||||||||| | || ||||||||| |||| |
|
|
| T |
9160 |
gttatactaatacaccttccaacttatttaatcaattgcaaataatattctagagtctccaaacctcgctctccacttgttcttgagattaaacactttt |
9259 |
T |
|
| Q |
540 |
tctaatgattttt--gtggactttgaatcatagattgcaagagtgatatatgaattgtagatt-gttttctttcaagaaatttgattgaggatcaaggtt |
636 |
Q |
| |
|
||||| ||||||| ||||| ||| | ||||||||||| |||||| |||| |||||||| | | |||| ||| ||| || ||||||||||||||||| | |
|
|
| T |
9260 |
tctaa-gatttttttgtggatttttagtcatagattgctagagtgttataggaattgtacactagtttattttgaagtaacttgattgaggatcaaggat |
9358 |
T |
|
| Q |
637 |
ctaaaggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaag |
736 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || | ||||||| ||||||||||||||| |||| ||||||||||||||| ||| |||||| ||| |
|
|
| T |
9359 |
ctaaaggacaagagggatttctttccacctcgaaggggaattgtgggggtctttctaacttttcaagtttaaggggatccaaactttaaacatagaaaat |
9458 |
T |
|
| Q |
737 |
aagaattcaaggt |
749 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
9459 |
aagaatttaaggt |
9471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 6e-64; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 286 - 749
Target Start/End: Original strand, 14800274 - 14800730
Alignment:
| Q |
286 |
ttgattcgattcaaatgttccttgaatcgta-tcaatctgcatagctaaagatttatcctttttcacatgtctgaattgaatcatacttaatgtgattcg |
384 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||| | ||| |||||||||||||| ||| |||||| | |||||| |
|
|
| T |
14800274 |
ttgattcgattcaaatgttctttgaatcgtaatcaatctttatagcttcatgtttgccctttttcacatgtttga---------tacttagtatgattca |
14800364 |
T |
|
| Q |
385 |
aatcaagtagttgttttg-ccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaata |
483 |
Q |
| |
|
||||||| |||||||| |||| || |||||||||| ||| ||||| |||| |||| ||||||||||||||||||||| ||||||| ||| | |||| |
|
|
| T |
14800365 |
aatcaagctgttgttttttccacaaaaattgcacttaccacccatgtatgtatatagatatacccatacaccttccaaccaactgaatcaattgcaaata |
14800464 |
T |
|
| Q |
484 |
acattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtga |
583 |
Q |
| |
|
||||| |||||||| ||||| |||||| | ||| | || ||||||||| |||||| ||| ||| |||||||| ||||| ||||||||| | |||||| |
|
|
| T |
14800465 |
ttattctagagtctccaaacctttctctctatttgttcttgagattaaacatttttt-taa-gatctttgtggattttgagtcatagatttctagagtgc |
14800562 |
T |
|
| Q |
584 |
tatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaattgtgag |
683 |
Q |
| |
|
|| |||| ||||| |||| ||||||||||| || |||||||||| | || |||||| ||||||||||||| ||||||||| ||| | ||||||| | |
|
|
| T |
14800563 |
tacatgagttgtacattggtttctttcaaggaacttgattgagggttaaaagtctaaaataaaagagggatttgtttccaccttcaaagtgaattgtggg |
14800662 |
T |
|
| Q |
684 |
ggtctttctaacttctc--aaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14800663 |
ggtctttctaacttctcagaagttaaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
14800730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 552 - 749
Target Start/End: Original strand, 8363684 - 8363881
Alignment:
| Q |
552 |
tgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagg |
651 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| |||||| |||||| |||| ||||||||||| || ||| ||||||| |||| || ||| ||||||||| |
|
|
| T |
8363684 |
tgtggattttgagtcatagattgctagagtactatatgtattgtatattggtttctttcaaggaacttggttgaggacgaagggtccaaacgaaaagagg |
8363783 |
T |
|
| Q |
652 |
gatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||||||||||||||||||| | | ||||| ||||||||||||||| |||| || |||||||||||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
8363784 |
gatttctttccacctccaaagtgacttgtgggggtctttctaacttttcaagttcaaggggatccaagctttggatatagcaaagaaggattcaaggt |
8363881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 50387439 - 50387334
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctca-acaaattttgtctaatgttgattgat |
222 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| |||| |||||| |||||| |||| | |||| | ||| ||||| |||||||||||||| |
|
|
| T |
50387439 |
gttttcgtataaatcatattctattttcatttatatgttagaatattaacaaatacatcaataaaggaactcagataaagtttgtttaatgttgattgat |
50387340 |
T |
|
| Q |
223 |
tgaatc |
228 |
Q |
| |
|
|||||| |
|
|
| T |
50387339 |
tgaatc |
50387334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 408 - 512
Target Start/End: Original strand, 8363492 - 8363596
Alignment:
| Q |
408 |
aatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctct |
507 |
Q |
| |
|
|||||||| |||||||||| || || || |||| |||||||||||||||| ||||| ||||||| ||| | ||||||||||| |||||| | ||||||| |
|
|
| T |
8363492 |
aatattgctcttatcactcctgcctatatatagttatacccatacacctttcaactaactgaatcaattgccaataacattctagagtcttcaaacctct |
8363591 |
T |
|
| Q |
508 |
ctctc |
512 |
Q |
| |
|
||||| |
|
|
| T |
8363592 |
ctctc |
8363596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 492 - 670
Target Start/End: Complemental strand, 15486363 - 15486184
Alignment:
| Q |
492 |
gagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaa |
591 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||||||||||| |||||||||| || |||||| |||||| ||||||||| | ||| || |||| | | |
|
|
| T |
15486363 |
gagtctccaaacctctatctccacttgatcttcagattaaactctttttctaataatcattgtggtctttgagtcatagatttctagattgttataggta |
15486264 |
T |
|
| Q |
592 |
ttgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggatttctttccacctccaa |
670 |
Q |
| |
|
||||| ||| || |||| ||| | ||| ||| | |||||| || |||| ||| |||| ||||||||||||||||||| |
|
|
| T |
15486263 |
ttgtaagttgattgcttttaaggatcttggttgggaatcaagaatccaaagtgaatagagtgatttctttccacctccaa |
15486184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 747
Target Start/End: Original strand, 26883177 - 26883448
Alignment:
| Q |
480 |
aataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaag |
578 |
Q |
| |
|
|||||||| || |||||||| |||||||||| ||||| | |||||||||||| |||| |||| |||| |||||||| ||||| ||||||||||| || |
|
|
| T |
26883177 |
aataacatactagagtctccaaacctctctc--cacttattattcagattaaacacttttcctaa-gattctttgtggattttgagtcatagattgctag |
26883273 |
T |
|
| Q |
579 |
agtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaatgaaaatt |
678 |
Q |
| |
|
||| |||| | | ||| ||| ||||||||||| | ||| || | ||||||| || |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
26883274 |
ggtgttatagggactgtgtattagtttctttcaaggatcttggttaggaatcaaggatccaaagaaaaagagggatttctttccacctccaagatgaatt |
26883373 |
T |
|
| Q |
679 |
gtga-----gggtctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaag |
747 |
Q |
| |
|
| | |||| ||||||| ||| |||| || | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26883374 |
gcggtgcaggggtttttctaatcttttcaagttccatgggatccaagcttcagacatagcaaagaagaattcaag |
26883448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 21853938 - 21853839
Alignment:
| Q |
133 |
tataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa----cctcaacaaattttgtctaatgttgattgattgaatc |
228 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||| || |||||||||| | |||||||||||||||||||| |
|
|
| T |
21853938 |
tataaatcatattctattttcattcatatgttaggatatcaacaaatgcatcaataaaagaactctaaacaaattttatttaatgttgattgattgaatc |
21853839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 677 - 749
Target Start/End: Original strand, 27173855 - 27173927
Alignment:
| Q |
677 |
ttgtgagggtctttctaacttctcaaatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
||||| || ||||||||||||||||| || |||||||||||||||||| ||| | ||||||| || ||||||| |
|
|
| T |
27173855 |
ttgtggggatctttctaacttctcaagttcaaggggatccaagcttcgaacacaacaaagaaaaactcaaggt |
27173927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 3664920 - 3664835
Alignment:
| Q |
127 |
ttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaac-ctcaacaaattttgtctaat |
212 |
Q |
| |
|
|||| |||||||||||| | || ||||| ||||| ||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
3664920 |
ttttggtataaatcataattcattttcatctctat-ttatgatatcaacaaaaatatcattaaaaaactcaacaaattttgtctaat |
3664835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 544
Target Start/End: Original strand, 17546549 - 17546681
Alignment:
| Q |
412 |
ttgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctct |
511 |
Q |
| |
|
|||||||||| || | || || || ||||||||| |||||| ||||||| |||| ||| ||| | | ||||||||| |||||||| ||||||||| | |
|
|
| T |
17546549 |
ttgcacttatgacccctgcctatatatagctataaccataccacttccaaactactaaatcaattgcaagtaacattctagagtctccaaacctctctat |
17546648 |
T |
|
| Q |
512 |
ccacttgattttcagattaaaccttttttctaa |
544 |
Q |
| |
|
||| ||| | |||||||||||| ||||||||| |
|
|
| T |
17546649 |
ccatttgttcttcagattaaacactttttctaa |
17546681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 31489385 - 31489491
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctc--aacaaattttgtctaatgttgattga |
221 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||| ||||||| |||| ||||| |||| | ||| |||||| ||||| ||||||||||||| |
|
|
| T |
31489385 |
gttttcgtataaatcatattttattttcattcatatgttaagatatcagcaaatgcatcaataaaagaactcaaaacaaaatttgtttaatgttgattga |
31489484 |
T |
|
| Q |
222 |
ttgaatc |
228 |
Q |
| |
|
|| |||| |
|
|
| T |
31489485 |
ttaaatc |
31489491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 47014605 - 47014542
Alignment:
| Q |
128 |
tttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa |
191 |
Q |
| |
|
||||| ||||||||||||| || |||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
47014605 |
tttcgcataaatcatattcgattttcattcatatgttaggatatcaacaaatgcatcaataaaa |
47014542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 48224550 - 48224596
Alignment:
| Q |
145 |
tctatattcatttctatgttaggatatcaacaaaaacatcattaaaa |
191 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
48224550 |
tctattttcattcttatgttaggatatcaacaaaaacatcgttaaaa |
48224596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 448 - 746
Target Start/End: Complemental strand, 18896161 - 18895865
Alignment:
| Q |
448 |
catacaccttccaacttactgaatatattactaataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatga |
547 |
Q |
| |
|
|||||| ||||||||||||||||| ||| | |||| |||| | |||||||| |||||||||| || ||| | || | ||||||| ||||||||| || |
|
|
| T |
18896161 |
catacaacttccaacttactgaatcaattgcaaatatcattttagagtctccaaacctctctc--catttgttcttgatattaaacactttttctaa-ga |
18896065 |
T |
|
| Q |
548 |
tttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaa |
647 |
Q |
| |
|
| |||||||| ||||| ||||||||||| |||||| |||| || |||| |||| ||||||||||| || ||||||||||||||||| |||||| ||||| |
|
|
| T |
18896064 |
tctttgtggattttgagtcatagattgctagagtgctataggagttgtgcattggtttctttcaaggaacttgattgaggatcaagggtctaaatgaaaa |
18895965 |
T |
|
| Q |
648 |
gagggatttctttccacctccaatgaaaattgtgagggtctttctaacttctcaa--atttaaggggatccaagcttcggacatagcaaagaagaattca |
745 |
Q |
| |
|
||| |||||||||||||||||| | || |||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
18895964 |
aaggtatttctttccacctccaaggggaagtgtg-gggtctttctaacttctcaaagatttaaggggatccaagcttccgacatatcaaagaagaattca |
18895866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 501 - 740
Target Start/End: Complemental strand, 14459189 - 14458950
Alignment:
| Q |
501 |
aacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagatt |
600 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||| ||||||||| |||||||||| ||||| ||||||||||| |||||| |||| | || ||||||| |
|
|
| T |
14459189 |
aacctctatctccacttgatcttcagagtaaacactttttctaagaatttttgtggtttttgagtcatagattgctagagtgctatagggatagtagatt |
14459090 |
T |
|
| Q |
601 |
gttttctttcaagaaatttgattgaggatcaaggttctaaagg-aaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaa-cttc |
698 |
Q |
| |
|
| ||||| ||||| || || || | ||||||| || ||||| |||| || |||||||||||||||| || | |||||| | || ||||| ||| |||| |
|
|
| T |
14459089 |
ggtttctctcaaggaacttcatcaggaatcaagggtccaaaggaaaaatagtgatttctttccacctctaa-ggaaattg-ggggttctttataatcttc |
14458992 |
T |
|
| Q |
699 |
tcaaatttaaggggatccaagcttcggacatagcaaagaaga |
740 |
Q |
| |
|
|||| || ||||||||| ||||| | |||||||||||||||| |
|
|
| T |
14458991 |
tcaagttcaaggggatctaagctccagacatagcaaagaaga |
14458950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 488 - 740
Target Start/End: Original strand, 17773938 - 17774188
Alignment:
| Q |
488 |
tcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatata |
587 |
Q |
| |
|
|||||||||| | | ||||||| |||||| | | ||||||||||| ||||||||| || ||||||| |||||| ||||||||||| |||||| ||| |
|
|
| T |
17773938 |
tcttgagtcttcaagcctctctttccactagttcttcagattaaattatttttctaagaatctttgtggtctttgagtcatagattgctagagtgctatg |
17774037 |
T |
|
| Q |
588 |
tgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaag-gaaaagagggatttctttccacctccaatgaaaattgtgagggt |
686 |
Q |
| |
|
|| |||||| |||| |||| |||||| || ||||||| | ||||||| || |||| ||| |||| ||||| |||||||||| | | |||| | || | |
|
|
| T |
17774038 |
tggattgtatattggtttcattcaaggaacttgattgggaatcaagggtccaaagagaatagagtgatttatttccacctctaggg---attgag-ggtt |
17774133 |
T |
|
| Q |
687 |
ctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaaga |
740 |
Q |
| |
|
|||| ||| |||||||| || ||||||||||||||| || ||||||||||||||| |
|
|
| T |
17774134 |
ctttataatcttctcaagttcaaggggatccaagctccgaacatagcaaagaaga |
17774188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 336 - 471
Target Start/End: Original strand, 42378505 - 42378641
Alignment:
| Q |
336 |
atttatcctttttcacatgtctgaattgaatcatacttaatgtgattcgaatcaagtagttgt-tttgccactaatattgcacttatcactcatgtctgt |
434 |
Q |
| |
|
|||||||| ||| ||||||||||| | |||||||||||| | | | |||||||| || ||||| |||| | ||||||| ||||||||||| || |||| |
|
|
| T |
42378505 |
atttatccatttacacatgtctgagtcgaatcatacttactctaaatcgaatcatgtcgttgtgtttgtctaaaatattgaacttatcactcctgcctgt |
42378604 |
T |
|
| Q |
435 |
agatagctatacccatacaccttccaacttactgaat |
471 |
Q |
| |
|
| ||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
42378605 |
atataactatacccatacaccttccaactcactgaat |
42378641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 480 - 609
Target Start/End: Complemental strand, 30989165 - 30989036
Alignment:
| Q |
480 |
aataacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatt-tttgtggactttgaatcatagattgcaag |
578 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| |||| | |||||||||||| |||||||||| |||| |||||| | || || ||||| ||| | || |
|
|
| T |
30989165 |
aataacattctagagtctccaaacctctctctcctcttgttcttcagattaaacattttttctaa-gattctttgtgcatttagagtcatatatttctag |
30989067 |
T |
|
| Q |
579 |
agtgatatatgaattgtagattgttttcttt |
609 |
Q |
| |
|
||| |||| |||||||| |||| ||||||| |
|
|
| T |
30989066 |
agtactataggaattgtatattggtttcttt |
30989036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 642 - 746
Target Start/End: Complemental strand, 30985601 - 30985496
Alignment:
| Q |
642 |
ggaaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaa-cttctcaaatttaaggggatccaagcttcggacatagcaaagaaga |
740 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||| || ||||||||||| |||||| | || || ||||||||| ||||| |||| | |||||||| |
|
|
| T |
30985601 |
ggaaaagaggaatttctttccacctccaaggtgaattgggaaggtctttctaatcttctcgagttcaatgggatccaaacttcgaacattgaaaagaaga |
30985502 |
T |
|
| Q |
741 |
attcaa |
746 |
Q |
| |
|
|||||| |
|
|
| T |
30985501 |
attcaa |
30985496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 601
Target Start/End: Complemental strand, 22095459 - 22095385
Alignment:
| Q |
527 |
attaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattg |
601 |
Q |
| |
|
||||||| |||||||||| || ||||||| ||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22095459 |
attaaacattttttctaagaatctttgtggtttttgagtcatagattggcagagtgatatatgaattgtagattg |
22095385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 2137047 - 2136995
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaa |
178 |
Q |
| |
|
||||||||| |||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
2137047 |
gttttcgtagaaatcatattctattttcattcatatgttaggatatcaacaaa |
2136995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 29488503 - 29488395
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatc-attaaa---acctc--aacaaattttgtctaatgttgatt |
219 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||| |||||||||||| |||| |||||| | ||| |||||| ||||| ||||||||||| |
|
|
| T |
29488503 |
gttttcgtataaatcatattttattttcattcatatgttaagatatcaacaaatgcatcaattaaaaagaactcaaaacaaagtttgtttaatgttgatt |
29488404 |
T |
|
| Q |
220 |
gattgaatc |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
29488403 |
gattgaatc |
29488395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 612
Target Start/End: Complemental strand, 23511095 - 23511005
Alignment:
| Q |
522 |
ttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaa |
612 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||| |||||| ||||||||||| |||||| |||| | |||| | ||| |||||||||| |
|
|
| T |
23511095 |
ttcagattaaacactttttctaataattattgtggtctttgattcatagattgctagagtgctatagggattgaaagttgatttctttcaa |
23511005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 31183706 - 31183654
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaa |
178 |
Q |
| |
|
|||||| ||||||||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
31183706 |
gttttcatataaatcatattctattttctttcatatgttaggatatcaacaaa |
31183654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 647
Target Start/End: Original strand, 27237108 - 27237163
Alignment:
| Q |
592 |
ttgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaa |
647 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||||||||| |||||| ||||| |
|
|
| T |
27237108 |
ttgtacattggtttctttcaaggaacttgattgaggatcaagggtctaaacgaaaa |
27237163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 525 - 643
Target Start/End: Complemental strand, 22586738 - 22586621
Alignment:
| Q |
525 |
agattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgttttctttcaagaaatttgattg |
624 |
Q |
| |
|
||||||||| ||||||||| ||| ||||| || ||||| ||||||||| | ||| |||| || ||||| || | ||||||||||| || ||||||| |
|
|
| T |
22586738 |
agattaaacactttttctaa-gatctttgtagaatttgaggcatagattggtacggtgctataagagttgtacatcggtttctttcaaggaacttgattg |
22586640 |
T |
|
| Q |
625 |
aggatcaaggttctaaagg |
643 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
22586639 |
aggatcaagggtctaaagg |
22586621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 42603458 - 42603519
Alignment:
| Q |
166 |
ggatatcaacaaaaacatcattaaaac--ctcaacaaattttgtctaatgttgattgattga |
225 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
42603458 |
ggataacaacaaaatcatcattaaaataactcaacaaattatgtctaatgttgagtgattga |
42603519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 782098 - 782033
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa |
191 |
Q |
| |
|
|||||| ||||||| ||||| ||| |||||| ||| |||||||||||||||||||| ||||||| |
|
|
| T |
782098 |
gttttcatataaataatattttattttcattcatatagtaggatatcaacaaaaacattattaaaa |
782033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 262 - 443
Target Start/End: Original strand, 24803024 - 24803206
Alignment:
| Q |
262 |
tatcaatattcatctggaagccacttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcctttttcacatgtctgaat |
361 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||||||| || ||||||||||||||||| ||||||| | |||||||| ||||||||||| ||||| |
|
|
| T |
24803024 |
tatcaatcttcatctagaaaccacttgattcgattcaaatattagttgaatcgtatcaatcttcatagctccatatttatcccttttcacatgtttgaat |
24803123 |
T |
|
| Q |
362 |
tgaatcatacttaatgtgattcgaatcaagtagttgtt-ttgccactaatattgcacttatcactcatgtctgtagatagcta |
443 |
Q |
| |
|
||| || | || ||||||| |||||| || |||||| ||||||| ||||| ||||||||||||| ||| | || ||||||| |
|
|
| T |
24803124 |
caaattattcgtagtgtgatttgaatcatgtcgttgttgttgccacaaatatcgcacttatcactcttgtatatatatagcta |
24803206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 504 - 749
Target Start/End: Original strand, 30074006 - 30074251
Alignment:
| Q |
504 |
ctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtgatatatgaattgtagattgtt |
603 |
Q |
| |
|
||||||||||||||| | |||| ||||||| ||||||||| || ||||||| ||||| ||||||||||| ||||| ||| | ||||||||||| | |
|
|
| T |
30074006 |
ctctctctccacttgttcttcatattaaacactttttctaagaatctttgtggtttttgagtcatagattgctagagttctattgggattgtagattggt |
30074105 |
T |
|
| Q |
604 |
ttctttcaagaaatttgattgaggatcaaggttctaaagg-aaaagagggatttctttccacctccaatgaaaattgtgagggtctttctaa-cttctca |
701 |
Q |
| |
|
|||||||||| || ||||||| ||||||| || ||||| ||||||| ||||||||||||||||||| | ||||| | || ||||| ||| ||||||| |
|
|
| T |
30074106 |
ttctttcaaggaaattgattggaaatcaagggtccaaaggaaaaagagtgatttctttccacctccaa-gggaattg-ggggttctttataatcttctca |
30074203 |
T |
|
| Q |
702 |
aatttaaggggatccaagcttcggacatagcaaagaagaattcaaggt |
749 |
Q |
| |
|
| || || ||||||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
30074204 |
agttcaaatggatccaagcttcagacatagcaaagaagagttcgaggt |
30074251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 36906849 - 36906784
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaaa |
191 |
Q |
| |
|
|||||| |||||| |||||| ||| |||||| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
36906849 |
gttttcatataaagcatattatattttcattcatttgttaggatatcaacaaaaacattattaaaa |
36906784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 12848320 - 12848425
Alignment:
| Q |
126 |
gttttcgtataaatcatattctatattcatttctatgttaggatatcaacaaaaacatcattaaa--acctc--aacaaattttgtctaatgttgattga |
221 |
Q |
| |
|
|||||||||||||| ||||||||| || ||| ||| |||||| ||||||||| |||||| |||| | ||| |||||| ||||| ||||||| ||||| |
|
|
| T |
12848320 |
gttttcgtataaattatattctatttttattcatatattaggacatcaacaaatacatcaataaaggaactcaaaacaaagtttgtttaatgttaattga |
12848419 |
T |
|
| Q |
222 |
ttgaat |
227 |
Q |
| |
|
|||||| |
|
|
| T |
12848420 |
ttgaat |
12848425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 286 - 670
Target Start/End: Original strand, 225107 - 225491
Alignment:
| Q |
286 |
ttgattcgattcaaatgttccttgaatcgtatcaatctgcatagctaaagatttatcct-ttttcacatgtctgaattgaatcatacttaatgtgattcg |
384 |
Q |
| |
|
||||||| ||||| | ||| |||||| |||||||||| ||||||| | |||| |||| |||||| ||||||||| || |||||||||||||| |||| |
|
|
| T |
225107 |
ttgattcaattcaggtattctttgaattgtatcaatcttcatagcttcatattt-tcctattttcaagtgtctgaatcgattcatacttaatgtggttcg |
225205 |
T |
|
| Q |
385 |
aatcaagtagtt-gttttgccactaatattgcacttatcactcatgtctgtagatagctatacccatacaccttccaacttactgaat-atattactaat |
482 |
Q |
| |
|
||||| || ||| ||||||||||||| |||||||| ||||||||||| || |||||| | || ||||||| |||||||| ||| | || | ||| |
|
|
| T |
225206 |
aatcaggtcgttatttttgccactaattttgcactttccactcatgtctatatatagcttctcacactcaccttctaacttactaaatcaatttgcaaat |
225305 |
T |
|
| Q |
483 |
aacattcttgagtctcccaacctctctctccacttgattttcagattaaaccttttttctaatgatttttgtggactttgaatcatagattgcaagagtg |
582 |
Q |
| |
|
| || | |||||||||| | |||||||||| ||||| | || ||||||||| ||||| | | ||| ||||| || ||||| |||||||||| ||||| |
|
|
| T |
225306 |
atcacttttgagtctccaatcctctctctctacttgttcttgagattaaacactttttttga-gatctttgtagaatttgaggcatagattgctagagt- |
225403 |
T |
|
| Q |
583 |
atatatgaattgtagattgttttctttcaagaaatttgattgaggatcaaggttctaaaggaaaagagggatttctttccacctccaa |
670 |
Q |
| |
|
|||| | ||||| |||| ||||||||||| | ||||||||||||||| | |||||||||||||| ||| | ||| ||||||||| |
|
|
| T |
225404 |
ctataggctttgtacattggtttctttcaaggatcttgattgaggatcaatggtctaaaggaaaagaaagatctattttcacctccaa |
225491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University